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Qingchao Chen

Qingchao Chen contributes to research discovery and scholarly infrastructure.

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Published work

4 published item(s)

preprint2026arXiv

3D MRI Image Pretraining via Controllable 2D Slice Navigation Task

Self-supervised pretraining has become the mainstream approach for learning MRI representations from unlabeled scans. However, most existing objectives still treat each scan primarily as static aggregations of slices, patches or volumes. We ask whether there exists an intrinsic form of self-supervision signal that is different from reconstructing the masked patches, through transforming the 3D volumes into controllable 2D rendered sequences: by rendering slices at continuous positions, orientations, and scales, a 3D volume can be converted into dense video-action sequences whose controls are the action trajectories. We study this formulation with an action-conditioned pretraining objective, where a tokenizer encodes slice observations and a latent dynamics model predicts the evolution of latent features. Across representative anatomical and spatial downstream tasks, the proposed pretraining is evaluated against standard static-volume baselines, tokenizer-only pretraining, and dynamics variants without aligned actions. These results suggest that controllable MRI slice navigation provides a useful complementary pretraining interface for learning anatomical and spatial representations from large unlabeled MRI collections.

preprint2026arXiv

Interpretable Machine Learning for Antepartum Prediction of Pregnancy-Associated Thrombotic Microangiopathy Using Routine Longitudinal Laboratory Data

Background: Pregnancy-associated thrombotic microangiopathy (P-TMA) is rare but life-threatening. Early risk prediction before overt clinical presentation remains challenging, as the associated laboratory abnormalities are subtle, multidimensional, and frequently masked by common physiological changes such as gestational thrombocytopenia and pregnancy-related proteinuria, thus overlapping heavily with benign obstetric and renal conditions. This complexity is poorly captured by univariate or rule-based approaches; however, it is addressable by machine learning, which can extract latent, time-dependent risk signatures from longitudinal clinical tests. Methods: This retrospective study included 300 pregnancies comprising 142 P-TMA cases and 158 controls. After exclusion of identifiers and non-informative variables, 146 longitudinal laboratory predictors were retained. Participants were divided into a training cohort (80%) and a held-out test cohort (20%) using stratified sampling. Five algorithms were evaluated: logistic regression, support vector machine with radial basis function kernel, random forest, extra trees, and gradient boosting. The final model was selected by mean cross-validated AUROC, refitted on the full training cohort, and evaluated once in the held-out test cohort. Interpretability analyses examined global feature importance and distributional patterns of leading predictors. Results: Gradient boosting was prespecified by cross-validation in the training cohort. The model achieved an AUROC of 0.872 (95% CI: 0.769-0.952) and an AUPRC of 0.883 (95% CI: 0.780-0.959) in a held-out test cohort, with sensitivity of 0.750 and specificity of 0.812. Conclusions: Longitudinal clinical laboratory tests obtained during routine care contained informative and clinically plausible signals for P-TMA risk. Notably, cystatin C at week 6 showed promise as an early monitoring indicator.

preprint2022arXiv

Delving into the Continuous Domain Adaptation

Existing domain adaptation methods assume that domain discrepancies are caused by a few discrete attributes and variations, e.g., art, real, painting, quickdraw, etc. We argue that this is not realistic as it is implausible to define the real-world datasets using a few discrete attributes. Therefore, we propose to investigate a new problem namely the Continuous Domain Adaptation (CDA) through the lens where infinite domains are formed by continuously varying attributes. Leveraging knowledge of two labeled source domains and several observed unlabeled target domains data, the objective of CDA is to learn a generalized model for whole data distribution with the continuous attribute. Besides the contributions of formulating a new problem, we also propose a novel approach as a strong CDA baseline. To be specific, firstly we propose a novel alternating training strategy to reduce discrepancies among multiple domains meanwhile generalize to unseen target domains. Secondly, we propose a continuity constraint when estimating the cross-domain divergence measurement. Finally, to decouple the discrepancy from the mini-batch size, we design a domain-specific queue to maintain the global view of the source domain that further boosts the adaptation performances. Our method is proven to achieve the state-of-the-art in CDA problem using extensive experiments. The code is available at https://github.com/SPIresearch/CDA.

preprint2022arXiv

Seeing your sleep stage: cross-modal distillation from EEG to infrared video

It is inevitably crucial to classify sleep stage for the diagnosis of various diseases. However, existing automated diagnosis methods mostly adopt the "gold-standard" lectroencephalogram (EEG) or other uni-modal sensing signal of the PolySomnoGraphy (PSG) machine in hospital, that are expensive, importable and therefore unsuitable for point-of-care monitoring at home. To enable the sleep stage monitoring at home, in this paper, we analyze the relationship between infrared videos and the EEG signal and propose a new task: to classify the sleep stage using infrared videos by distilling useful knowledge from EEG signals to the visual ones. To establish a solid cross-modal benchmark for this application, we develop a new dataset termed as Seeing your Sleep Stage via Infrared Video and EEG ($S^3VE$). $S^3VE$ is a large-scale dataset including synchronized infrared video and EEG signal for sleep stage classification, including 105 subjects and 154,573 video clips that is more than 1100 hours long. Our contributions are not limited to datasets but also about a novel cross-modal distillation baseline model namely the structure-aware contrastive distillation (SACD) to distill the EEG knowledge to infrared video features. The SACD achieved the state-of-the-art performances on both our $S^3VE$ and the existing cross-modal distillation benchmark. Both the benchmark and the baseline methods will be released to the community. We expect to raise more attentions and promote more developments in the sleep stage classification and more importantly the cross-modal distillation from clinical signal/media to the conventional media.