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Researcher profile

Peng Cao

Peng Cao contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Computer Visioneess.IVMachine LearningArtificial Intelligenceeess.SPHardware Architecturephysics.med-phQuantitative Methods

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Published work

10 published item(s)

preprint2026arXiv

CLEF: EEG Foundation Model for Learning Clinical Semantics

Clinical EEG interpretation requires reasoning over full EEG sessions and integrating signal patterns with clinical context. Existing EEG foundation models are largely designed for short-window decoding and do not incorporate clinical context. We introduce CLEF, a clinically grounded long-context EEG foundation model. CLEF represents EEG sessions as 3D multitaper spectrogram tokens, enabling tractable Transformer modeling at session scale, and aligns embeddings with neurologist reports and structured EHR data through contrastive objectives. We evaluate CLEF on a new 234-task benchmark spanning disease phenotypes, medication exposures, and EEG findings, with more than 260k EEG sessions from over 108k patients. CLEF outperforms prior EEG foundation models on 229 of 234 tasks, improving mean AUROC from 0.65 to 0.74. Reconstruction-only pretraining surpasses prior EEG foundation models, while report and EHR alignment yields further gains. Held-out concept and external-cohort experiments suggest that these representations transfer beyond observed alignment targets. These results support session-scale, clinically grounded representation learning as a promising foundation-model paradigm for clinical EEG.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

WavesFM: Hierarchical Representation Learning for Longitudinal Wearable Sensor Waveforms

Wearable sensors enable the continuous acquisition of high-resolution physiological waveforms, such as photoplethysmography and accelerometry, under free-living conditions. However, inferring health-related phenotypes from these signals presents significant challenges due to high sampling frequencies, multimodal dependencies, and extreme sequence lengths (e.g., weeks of recordings), compounded by a scarcity of ground-truth labels. To address these challenges, existing self-supervised learning (SSL) methodologies typically follow two paradigms: (1) learning rich morphological representations from short waveform segments while collapsing longitudinal dynamics through simple aggregation, or (2) modeling behavioral patterns from coarse, hand-crafted features (e.g. heart rate, step counts) spanning longer horizons but foregoing subtle, predictive signatures in raw waveforms. To bridge this gap, we propose WavesFM, a foundation model utilizing a two-stage SSL framework for longitudinal physiological data. Specifically, we decompose the learning problem into two stages: first, a segment-level encoder is pretrained to extract local embeddings from short waveforms; subsequently, a temporal encoder is trained to model the sequence of these embeddings across a multi-day horizon. This hierarchical approach overcomes the computational complexity of high-resolution, long-sequence data, allowing the overall model to capture both local signal semantics and the complex circadian and inter-day variations governing physiological dynamics. Pretrained on over 6.8M hours (N=324k individuals) of recordings for the first stage and 5.3M hours (N=10k) for the second stage, WavesFM demonstrates superior performance across 58 diverse tasks spanning demographics, lifestyle, health conditions, and medications.

0 citations0 reviewsNo code linkedOpen access
preprint2023arXiv

Edge Enhanced Image Style Transfer via Transformers

In recent years, arbitrary image style transfer has attracted more and more attention. Given a pair of content and style images, a stylized one is hoped that retains the content from the former while catching style patterns from the latter. However, it is difficult to simultaneously keep well the trade-off between the content details and the style features. To stylize the image with sufficient style patterns, the content details may be damaged and sometimes the objects of images can not be distinguished clearly. For this reason, we present a new transformer-based method named STT for image style transfer and an edge loss which can enhance the content details apparently to avoid generating blurred results for excessive rendering on style features. Qualitative and quantitative experiments demonstrate that STT achieves comparable performance to state-of-the-art image style transfer methods while alleviating the content leak problem.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

A Timing Yield Model for SRAM Cells in Sub/Near-threshold Voltages Based on A Compact Drain Current Model

Sub/Near-threshold static random-access memory (SRAM) design is crucial for addressing the memory bottleneck in energy-constrained applications. However, the high integration density and reliability under process variations demand an accurate estimation of extremely small failure probabilities. To capture such a rare event in memory circuits, the time and storage overhead of conventional Monte Carlo (MC) simulations cannot be tolerated. On the other hand, classic analytical methods predicting failure probabilities from a physical expression become inaccurate in the sub/near-threshold region due to the assumed distribution or the oversimplified drain current model for nanoscale devices. This work first proposes a simple but efficient drain current model to describe the drain-induced barrier lowering effect at low voltages. Based on that, the probability density functions of the interest metrics in SRAM are derived. Two analytical models are then put forward to evaluate SRAM dynamic stabilities including access and write-time failures. The proposed models can be extended easily to different types of SRAM with different read/write assist circuits. The models are validated against MC simulations across different operating voltages and temperatures. The average relative errors at 0.5V VDD are only 8.8% and 10.4% for the access-time and write failure models respectively. The size of required data samples is 43.6X smaller than that of the state-of-the-art method.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

MRI Reconstruction Using Deep Bayesian Estimation

Purpose: To develop a deep learning-based Bayesian inference for MRI reconstruction. Methods: We modeled the MRI reconstruction problem with Bayes's theorem, following the recently proposed PixelCNN++ method. The image reconstruction from incomplete k-space measurement was obtained by maximizing the posterior possibility. A generative network was utilized as the image prior, which was computationally tractable, and the k-space data fidelity was enforced by using an equality constraint. The stochastic backpropagation was utilized to calculate the descent gradient in the process of maximum a posterior, and a projected subgradient method was used to impose the equality constraint. In contrast to the other deep learning reconstruction methods, the proposed one used the likelihood of prior as the training loss and the objective function in reconstruction to improve the image quality. Results: The proposed method showed an improved performance in preserving image details and reducing aliasing artifacts, compared with GRAPPA, $\ell_1$-ESPRiT, and MODL, a state-of-the-art deep learning reconstruction method. The proposed method generally achieved more than 5 dB peak signal-to-noise ratio improvement for compressed sensing and parallel imaging reconstructions compared with the other methods. Conclusion: The Bayesian inference significantly improved the reconstruction performance, compared with the conventional $\ell_1$-sparsity prior in compressed sensing reconstruction tasks. More importantly, the proposed reconstruction framework can be generalized for most MRI reconstruction scenarios.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Targeted Supervised Contrastive Learning for Long-Tailed Recognition

Real-world data often exhibits long tail distributions with heavy class imbalance, where the majority classes can dominate the training process and alter the decision boundaries of the minority classes. Recently, researchers have investigated the potential of supervised contrastive learning for long-tailed recognition, and demonstrated that it provides a strong performance gain. In this paper, we show that while supervised contrastive learning can help improve performance, past baselines suffer from poor uniformity brought in by imbalanced data distribution. This poor uniformity manifests in samples from the minority class having poor separability in the feature space. To address this problem, we propose targeted supervised contrastive learning (TSC), which improves the uniformity of the feature distribution on the hypersphere. TSC first generates a set of targets uniformly distributed on a hypersphere. It then makes the features of different classes converge to these distinct and uniformly distributed targets during training. This forces all classes, including minority classes, to maintain a uniform distribution in the feature space, improves class boundaries, and provides better generalization even in the presence of long-tail data. Experiments on multiple datasets show that TSC achieves state-of-the-art performance on long-tailed recognition tasks.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

UCTransNet: Rethinking the Skip Connections in U-Net from a Channel-wise Perspective with Transformer

Most recent semantic segmentation methods adopt a U-Net framework with an encoder-decoder architecture. It is still challenging for U-Net with a simple skip connection scheme to model the global multi-scale context: 1) Not each skip connection setting is effective due to the issue of incompatible feature sets of encoder and decoder stage, even some skip connection negatively influence the segmentation performance; 2) The original U-Net is worse than the one without any skip connection on some datasets. Based on our findings, we propose a new segmentation framework, named UCTransNet (with a proposed CTrans module in U-Net), from the channel perspective with attention mechanism. Specifically, the CTrans module is an alternate of the U-Net skip connections, which consists of a sub-module to conduct the multi-scale Channel Cross fusion with Transformer (named CCT) and a sub-module Channel-wise Cross-Attention (named CCA) to guide the fused multi-scale channel-wise information to effectively connect to the decoder features for eliminating the ambiguity. Hence, the proposed connection consisting of the CCT and CCA is able to replace the original skip connection to solve the semantic gaps for an accurate automatic medical image segmentation. The experimental results suggest that our UCTransNet produces more precise segmentation performance and achieves consistent improvements over the state-of-the-art for semantic segmentation across different datasets and conventional architectures involving transformer or U-shaped framework. Code: https://github.com/McGregorWwww/UCTransNet.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Bone Material Analogues for PET/MRI Phantoms

Purpose: To develop bone material analogues that can be used in construction of phantoms for simultaneous PET/MRI systems. Methods: Plaster was used as the basis for the bone material analogues tested in this study. It was mixed with varying concentrations of an iodinated CT contrast, a gadolinium-based MR contrast agent, and copper sulfate to modulate the attenuation properties and MRI properties (T1 and T2*). Attenuation was measured with CT and 68Ge transmission scans, and MRI properties were measured with quantitative ultrashort echo time pulse sequences. A proof-of-concept skull was created by plaster casting. Results: Undoped plaster has a 511 keV attenuation coefficient (~0.14 cm-1) similar to cortical bone (0.10-0.15 cm-1), but slightly longer T1 (~500 ms) and T2* (~1.2 ms) MR parameters compared to bone (T1 ~ 300 ms, T2* ~ 0.4 ms). Doping with the iodinated agent resulted in increased attenuation with minimal perturbation to the MR parameters. Doping with a gadolinium chelate greatly reduced T1 and T2*, resulting in extremely short T1 values when the target T2* values were reached, while the attenuation coefficient was unchanged. Doping with copper sulfate was more selective for T2* shortening and achieved comparable T1 and T2* values to bone (after 1 week of drying), while the attenuation coefficient was unchanged. Conclusions: Plaster doped with copper sulfate is a promising bone material analogue for a PET/MRI phantom, mimicking the MR properties (T1 and T2*) and 511 keV attenuation coefficient of human cortical bone.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Development of Conditional Random Field Insert for UNet-based Zonal Prostate Segmentation on T2-Weighted MRI

Purpose: A conventional 2D UNet convolutional neural network (CNN) architecture may result in ill-defined boundaries in segmentation output. Several studies imposed stronger constraints on each level of UNet to improve the performance of 2D UNet, such as SegNet. In this study, we investigated 2D SegNet and a proposed conditional random field insert (CRFI) for zonal prostate segmentation from clinical T2-weighted MRI data. Methods: We introduced a new methodology that combines SegNet and CRFI to improve the accuracy and robustness of the segmentation. CRFI has feedback connections that encourage the data consistency at multiple levels of the feature pyramid. On the encoder side of the SegNet, the CRFI combines the input feature maps and convolution block output based on their spatial local similarity, like a trainable bilateral filter. For all networks, 725 2D images (i.e., 29 MRI cases) were used in training; while, 174 2D images (i.e., 6 cases) were used in testing. Results: The SegNet with CRFI achieved the relatively high Dice coefficients (0.76, 0.84, and 0.89) for the peripheral zone, central zone, and whole gland, respectively. Compared with UNet, the SegNet+CRFIs segmentation has generally higher Dice score and showed the robustness in determining the boundaries of anatomical structures compared with the SegNet or UNet segmentation. The SegNet with a CRFI at the end showed the CRFI can correct the segmentation errors from SegNet output, generating smooth and consistent segmentation for the prostate. Conclusion: UNet based deep neural networks demonstrated in this study can perform zonal prostate segmentation, achieving high Dice coefficients compared with those in the literature. The proposed CRFI method can reduce the fuzzy boundaries that affected the segmentation performance of baseline UNet and SegNet models.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

TCGM: An Information-Theoretic Framework for Semi-Supervised Multi-Modality Learning

Fusing data from multiple modalities provides more information to train machine learning systems. However, it is prohibitively expensive and time-consuming to label each modality with a large amount of data, which leads to a crucial problem of semi-supervised multi-modal learning. Existing methods suffer from either ineffective fusion across modalities or lack of theoretical guarantees under proper assumptions. In this paper, we propose a novel information-theoretic approach, namely \textbf{T}otal \textbf{C}orrelation \textbf{G}ain \textbf{M}aximization (TCGM), for semi-supervised multi-modal learning, which is endowed with promising properties: (i) it can utilize effectively the information across different modalities of unlabeled data points to facilitate training classifiers of each modality (ii) it has theoretical guarantee to identify Bayesian classifiers, i.e., the ground truth posteriors of all modalities. Specifically, by maximizing TC-induced loss (namely TC gain) over classifiers of all modalities, these classifiers can cooperatively discover the equivalent class of ground-truth classifiers; and identify the unique ones by leveraging limited percentage of labeled data. We apply our method to various tasks and achieve state-of-the-art results, including news classification, emotion recognition and disease prediction.

0 citations0 reviewsNo code linkedOpen access