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Researcher profile

Omid Mohareri

Omid Mohareri contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Computer VisionRobotics

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Published work

7 published item(s)

preprint2026arXiv

SCARED-C: Corrected Camera Poses for Endoscopic Depth Estimation

The SCARED dataset is a widely used benchmark for endoscopic depth estimation, offering ground-truth 3D reconstructions captured with a structured light sensor. However, the depth maps for non-keyframe images rely on robot kinematics that introduce substantial pose errors, limiting the reliably labeled portion of the dataset to 35 keyframes. We present SCARED-C, a corrected version of the SCARED dataset that expands the number of reliable RGB-D pairs from 35 to 17,135. Our pipeline applies COLMAP, a Structure-from-Motion system, to re-estimate camera poses for all frames, followed by a scale recovery step that aligns the resulting reconstructions to metric space using the ground-truth keyframe depth maps. We validate the corrected poses through (1) stereo disparity evaluation and (2) monocular depth estimation experiments. The corrected dataset and code are publicly released to the community.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Adaptation of Surgical Activity Recognition Models Across Operating Rooms

Automatic surgical activity recognition enables more intelligent surgical devices and a more efficient workflow. Integration of such technology in new operating rooms has the potential to improve care delivery to patients and decrease costs. Recent works have achieved a promising performance on surgical activity recognition; however, the lack of generalizability of these models is one of the critical barriers to the wide-scale adoption of this technology. In this work, we study the generalizability of surgical activity recognition models across operating rooms. We propose a new domain adaptation method to improve the performance of the surgical activity recognition model in a new operating room for which we only have unlabeled videos. Our approach generates pseudo labels for unlabeled video clips that it is confident about and trains the model on the augmented version of the clips. We extend our method to a semi-supervised domain adaptation setting where a small portion of the target domain is also labeled. In our experiments, our proposed method consistently outperforms the baselines on a dataset of more than 480 long surgical videos collected from two operating rooms.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

An Empirical Study on Activity Recognition in Long Surgical Videos

Activity recognition in surgical videos is a key research area for developing next-generation devices and workflow monitoring systems. Since surgeries are long processes with highly-variable lengths, deep learning models used for surgical videos often consist of a two-stage setup using a backbone and temporal sequence model. In this paper, we investigate many state-of-the-art backbones and temporal models to find architectures that yield the strongest performance for surgical activity recognition. We first benchmark the models performance on a large-scale activity recognition dataset containing over 800 surgery videos captured in multiple clinical operating rooms. We further evaluate the models on the two smaller public datasets, the Cholec80 and Cataract-101 datasets, containing only 80 and 101 videos respectively. We empirically found that Swin-Transformer+BiGRU temporal model yielded strong performance on both datasets. Finally, we investigate the adaptability of the model to new domains by fine-tuning models to a new hospital and experimenting with a recent unsupervised domain adaptation approach.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Multi-Modal Unsupervised Pre-Training for Surgical Operating Room Workflow Analysis

Data-driven approaches to assist operating room (OR) workflow analysis depend on large curated datasets that are time consuming and expensive to collect. On the other hand, we see a recent paradigm shift from supervised learning to self-supervised and/or unsupervised learning approaches that can learn representations from unlabeled datasets. In this paper, we leverage the unlabeled data captured in robotic surgery ORs and propose a novel way to fuse the multi-modal data for a single video frame or image. Instead of producing different augmentations (or 'views') of the same image or video frame which is a common practice in self-supervised learning, we treat the multi-modal data as different views to train the model in an unsupervised manner via clustering. We compared our method with other state of the art methods and results show the superior performance of our approach on surgical video activity recognition and semantic segmentation.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

RGB-D Semantic SLAM for Surgical Robot Navigation in the Operating Room

Gaining spatial awareness of the Operating Room (OR) for surgical robotic systems is a key technology that can enable intelligent applications aiming at improved OR workflow. In this work, we present a method for semantic dense reconstruction of the OR scene using multiple RGB-D cameras attached and registered to the da Vinci Xi surgical system. We developed a novel SLAM approach for robot pose tracking in dynamic OR environments and dense reconstruction of the static OR table object. We validated our techniques in a mock OR by collecting data sequences with corresponding optical tracking trajectories as ground truth and manually annotated 100 frame segmentation masks. The mean absolute trajectory error is $11.4\pm1.9$ mm and the mean relative pose error is $1.53\pm0.48$ degrees per second. The segmentation DICE score is improved from 0.814 to 0.902 by using our SLAM system compared to single frame. Our approach effectively produces a dense OR table reconstruction in dynamic clinical environments as well as improved semantic segmentation on individual image frames.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

A Robotic 3D Perception System for Operating Room Environment Awareness

Purpose: We describe a 3D multi-view perception system for the da Vinci surgical system to enable Operating room (OR) scene understanding and context awareness. Methods: Our proposed system is comprised of four Time-of-Flight (ToF) cameras rigidly attached to strategic locations on the daVinci Xi patient side cart (PSC). The cameras are registered to the robot's kinematic chain by performing a one-time calibration routine and therefore, information from all cameras can be fused and represented in one common coordinate frame. Based on this architecture, a multi-view 3D scene semantic segmentation algorithm is created to enable recognition of common and salient objects/equipment and surgical activities in a da Vinci OR. Our proposed 3D semantic segmentation method has been trained and validated on a novel densely annotated dataset that has been captured from clinical scenarios. Results: The results show that our proposed architecture has acceptable registration error ($3.3\%\pm1.4\%$ of object-camera distance) and can robustly improve scene segmentation performance (mean Intersection Over Union - mIOU) for less frequently appearing classes ($\ge 0.013$) compared to a single-view method. Conclusion: We present the first dynamic multi-view perception system with a novel segmentation architecture, which can be used as a building block technology for applications such as surgical workflow analysis, automation of surgical sub-tasks and advanced guidance systems.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Automatic Operating Room Surgical Activity Recognition for Robot-Assisted Surgery

Automatic recognition of surgical activities in the operating room (OR) is a key technology for creating next generation intelligent surgical devices and workflow monitoring/support systems. Such systems can potentially enhance efficiency in the OR, resulting in lower costs and improved care delivery to the patients. In this paper, we investigate automatic surgical activity recognition in robot-assisted operations. We collect the first large-scale dataset including 400 full-length multi-perspective videos from a variety of robotic surgery cases captured using Time-of-Flight cameras. We densely annotate the videos with 10 most recognized and clinically relevant classes of activities. Furthermore, we investigate state-of-the-art computer vision action recognition techniques and adapt them for the OR environment and the dataset. First, we fine-tune the Inflated 3D ConvNet (I3D) for clip-level activity recognition on our dataset and use it to extract features from the videos. These features are then fed to a stack of 3 Temporal Gaussian Mixture layers which extracts context from neighboring clips, and eventually go through a Long Short Term Memory network to learn the order of activities in full-length videos. We extensively assess the model and reach a peak performance of 88% mean Average Precision.

0 citations0 reviewsNo code linkedOpen access