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Researcher profile

Nathan Jacobs

Nathan Jacobs contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Computer VisionMachine Learningeess.IVArtificial IntelligenceQuantitative Methodsastro-ph.COastro-ph.IMComputation and LanguageMultimedia

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Published work

17 published item(s)

preprint2026arXiv

deadtrees.earth-aerial: A Multi-Resolution Aerial Image Dataset for Tree Cover and Mortality Detection

Forests worldwide are increasingly threatened by climate change and disturbances such as fire, pests, and pathogens, creating an urgent need for scalable monitoring of tree cover and tree mortality. Aerial imagery from drones and aircraft is a key data source for detailed and large-scale mapping of tree crowns and mortality. However, related progress is limited by the lack of globally representative, harmonized datasets for joint segmentation of tree cover and mortality. We introduce two novel, open, machine-learning-ready datasets to enable joint segmentation of tree cover and tree mortality from centimeter-scale aerial imagery for the first time at global scales. With DTE-aerial-train, we provide a training dataset comprising 385K image patches of size 1024x1024 pixels, with resolutions ranging from 2.5 to 20 cm. It includes multi-class expert-annotated and -audited pseudo-labels for tree cover and mortality. With DTE-aerial-bench, we provide a geographically balanced benchmark test set of 25 globally distributed orthoimages totaling 525 patches with high-quality expert annotations for both tree cover and mortality. Both the training and benchmark datasets span tropical, temperate, boreal, and dryland biomes and cover a wide range of forest structures and mortality patterns. Using the benchmark test set for evaluation, we establish strong reference baselines that improve mortality segmentation across all biomes and scales with significant gains in challenging regions, such as boreal forests, where the F1 score increases from 0.40 to 0.58 with around 45% relative improvement. All data, models, and code will be publicly released under permissive open-source licenses. An interactive visualization of the benchmark dataset is available at deadtrees.earth/releases/dte-aerial-bench.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

DiffVAS: Diffusion-Guided Visual Active Search in Partially Observable Environments

Visual active search (VAS) has been introduced as a modeling framework that leverages visual cues to direct aerial (e.g., UAV-based) exploration and pinpoint areas of interest within extensive geospatial regions. Potential applications of VAS include detecting hotspots for rare wildlife poaching, aiding search-and-rescue missions, and uncovering illegal trafficking of weapons, among other uses. Previous VAS approaches assume that the entire search space is known upfront, which is often unrealistic due to constraints such as a restricted field of view and high acquisition costs, and they typically learn policies tailored to specific target objects, which limits their ability to search for multiple target categories simultaneously. In this work, we propose DiffVAS, a target-conditioned policy that searches for diverse objects simultaneously according to task requirements in partially observable environments, which advances the deployment of visual active search policies in real-world applications. DiffVAS leverages a diffusion model to reconstruct the entire geospatial area from sequentially observed partial glimpses, which enables a target-conditioned reinforcement learning-based planning module to effectively reason and guide subsequent search steps. Extensive experiments demonstrate that DiffVAS excels in searching diverse objects in partially observable environments, significantly surpassing state-of-the-art methods on several datasets.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

The first global agricultural field boundary map at 10m resolution

The agricultural field is the natural unit at which crops are planted, managed, regulated, and reported, yet most global remote-sensing products for agriculture are only available at the pixel level. While some high-quality field-level data products exist, they come from parcel registries covering only parts of Europe or from ML-derived products for individual countries. No openly available, globally consistent map of agricultural field boundaries exists to date. Here we present the first global field boundary dataset at 10\,m resolution for the years 2024 and 2025, comprising 3.17 billion remote-sensing field polygons (1.62 B in 2024 and 1.55 B in 2025) across 241 countries and territories, produced by applying a U-Net segmentation model trained on the Fields of The World dataset to cloud-free Sentinel-2 mosaics. Validated against ground-truth field boundaries in 24 countries, the map achieved a mean pixel-level recall of 0.85 with 14 countries exceeding 0.90. Evaluation against full-country ground-truth datasets in Austria, Latvia, and Finland yielded F1 scores of 0.89, 0.88, and 0.74, respectively. Because reference data for global validation is inherently incomplete, we accompanied the map with a 500 m confidence layer that identifies regions where predictions are reliable. We release the dataset openly as three global maps: the confidence-thresholded default field boundary dataset, the full unfiltered dataset, and the continuous-valued confidence raster. These maps provide the first globally consistent field-level unit of analysis for crop monitoring, food security, and downstream agricultural science.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Causality for Inherently Explainable Transformers: CAT-XPLAIN

There have been several post-hoc explanation approaches developed to explain pre-trained black-box neural networks. However, there is still a gap in research efforts toward designing neural networks that are inherently explainable. In this paper, we utilize a recently proposed instance-wise post-hoc causal explanation method to make an existing transformer architecture inherently explainable. Once trained, our model provides an explanation in the form of top-$k$ regions in the input space of the given instance contributing to its decision. We evaluate our method on binary classification tasks using three image datasets: MNIST, FMNIST, and CIFAR. Our results demonstrate that compared to the causality-based post-hoc explainer model, our inherently explainable model achieves better explainability results while eliminating the need of training a separate explainer model. Our code is available at https://github.com/mvrl/CAT-XPLAIN.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Content-Aware Detection of Temporal Metadata Manipulation

Most pictures shared online are accompanied by temporal metadata (i.e., the day and time they were taken), which makes it possible to associate an image content with real-world events. Maliciously manipulating this metadata can convey a distorted version of reality. In this work, we present the emerging problem of detecting timestamp manipulation. We propose an end-to-end approach to verify whether the purported time of capture of an outdoor image is consistent with its content and geographic location. We consider manipulations done in the hour and/or month of capture of a photograph. The central idea is the use of supervised consistency verification, in which we predict the probability that the image content, capture time, and geographical location are consistent. We also include a pair of auxiliary tasks, which can be used to explain the network decision. Our approach improves upon previous work on a large benchmark dataset, increasing the classification accuracy from 59.0% to 81.1%. We perform an ablation study that highlights the importance of various components of the method, showing what types of tampering are detectable using our approach. Finally, we demonstrate how the proposed method can be employed to estimate a possible time-of-capture in scenarios in which the timestamp is missing from the metadata.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Estimating Cluster Masses from SDSS Multi-band Images with Transfer Learning

The total masses of galaxy clusters characterize many aspects of astrophysics and the underlying cosmology. It is crucial to obtain reliable and accurate mass estimates for numerous galaxy clusters over a wide range of redshifts and mass scales. We present a transfer-learning approach to estimate cluster masses using the ugriz-band images in the SDSS Data Release 12. The target masses are derived from X-ray or SZ measurements that are only available for a small subset of the clusters. We designed a semi-supervised deep learning model consisting of two convolutional neural networks. In the first network, a feature extractor is trained to classify the SDSS photometric bands. The second network takes the previously trained features as inputs to estimate their total masses. The training and testing processes in this work depend purely on real observational data. Our algorithm reaches a mean absolute error (MAE) of 0.232 dex on average and 0.214 dex for the best fold. The performance is comparable to that given by redMaPPer, 0.192 dex. We have further applied a joint integrated gradient and class activation mapping method to interpret such a two-step neural network. The performance of our algorithm is likely to improve as the size of training dataset increases. This proof-of-concept experiment demonstrates the potential of deep learning in maximizing the scientific return of the current and future large cluster surveys.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Revisiting Near/Remote Sensing with Geospatial Attention

This work addresses the task of overhead image segmentation when auxiliary ground-level images are available. Recent work has shown that performing joint inference over these two modalities, often called near/remote sensing, can yield significant accuracy improvements. Extending this line of work, we introduce the concept of geospatial attention, a geometry-aware attention mechanism that explicitly considers the geospatial relationship between the pixels in a ground-level image and a geographic location. We propose an approach for computing geospatial attention that incorporates geometric features and the appearance of the overhead and ground-level imagery. We introduce a novel architecture for near/remote sensing that is based on geospatial attention and demonstrate its use for five segmentation tasks. The results demonstrate that our method significantly outperforms the previous state-of-the-art methods.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Contrastive Cross-Modal Pre-Training: A General Strategy for Small Sample Medical Imaging

A key challenge in training neural networks for a given medical imaging task is often the difficulty of obtaining a sufficient number of manually labeled examples. In contrast, textual imaging reports, which are often readily available in medical records, contain rich but unstructured interpretations written by experts as part of standard clinical practice. We propose using these textual reports as a form of weak supervision to improve the image interpretation performance of a neural network without requiring additional manually labeled examples. We use an image-text matching task to train a feature extractor and then fine-tune it in a transfer learning setting for a supervised task using a small labeled dataset. The end result is a neural network that automatically interprets imagery without requiring textual reports during inference. This approach can be applied to any task for which text-image pairs are readily available. We evaluate our method on three classification tasks and find consistent performance improvements, reducing the need for labeled data by 67%-98%.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

2D Convolutional Neural Networks for 3D Digital Breast Tomosynthesis Classification

Automated methods for breast cancer detection have focused on 2D mammography and have largely ignored 3D digital breast tomosynthesis (DBT), which is frequently used in clinical practice. The two key challenges in developing automated methods for DBT classification are handling the variable number of slices and retaining slice-to-slice changes. We propose a novel deep 2D convolutional neural network (CNN) architecture for DBT classification that simultaneously overcomes both challenges. Our approach operates on the full volume, regardless of the number of slices, and allows the use of pre-trained 2D CNNs for feature extraction, which is important given the limited amount of annotated training data. In an extensive evaluation on a real-world clinical dataset, our approach achieves 0.854 auROC, which is 28.80% higher than approaches based on 3D CNNs. We also find that these improvements are stable across a range of model configurations.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Defense-PointNet: Protecting PointNet Against Adversarial Attacks

Despite remarkable performance across a broad range of tasks, neural networks have been shown to be vulnerable to adversarial attacks. Many works focus on adversarial attacks and defenses on 2D images, but few focus on 3D point clouds. In this paper, our goal is to enhance the adversarial robustness of PointNet, which is one of the most widely used models for 3D point clouds. We apply the fast gradient sign attack method (FGSM) on 3D point clouds and find that FGSM can be used to generate not only adversarial images but also adversarial point clouds. To minimize the vulnerability of PointNet to adversarial attacks, we propose Defense-PointNet. We compare our model with two baseline approaches and show that Defense-PointNet significantly improves the robustness of the network against adversarial samples.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Dynamic Image for 3D MRI Image Alzheimer's Disease Classification

We propose to apply a 2D CNN architecture to 3D MRI image Alzheimer's disease classification. Training a 3D convolutional neural network (CNN) is time-consuming and computationally expensive. We make use of approximate rank pooling to transform the 3D MRI image volume into a 2D image to use as input to a 2D CNN. We show our proposed CNN model achieves $9.5\%$ better Alzheimer's disease classification accuracy than the baseline 3D models. We also show that our method allows for efficient training, requiring only 20% of the training time compared to 3D CNN models. The code is available online: https://github.com/UkyVision/alzheimer-project.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Improved Trainable Calibration Method for Neural Networks on Medical Imaging Classification

Recent works have shown that deep neural networks can achieve super-human performance in a wide range of image classification tasks in the medical imaging domain. However, these works have primarily focused on classification accuracy, ignoring the important role of uncertainty quantification. Empirically, neural networks are often miscalibrated and overconfident in their predictions. This miscalibration could be problematic in any automatic decision-making system, but we focus on the medical field in which neural network miscalibration has the potential to lead to significant treatment errors. We propose a novel calibration approach that maintains the overall classification accuracy while significantly improving model calibration. The proposed approach is based on expected calibration error, which is a common metric for quantifying miscalibration. Our approach can be easily integrated into any classification task as an auxiliary loss term, thus not requiring an explicit training round for calibration. We show that our approach reduces calibration error significantly across various architectures and datasets.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Joint 2D-3D Breast Cancer Classification

Breast cancer is the malignant tumor that causes the highest number of cancer deaths in females. Digital mammograms (DM or 2D mammogram) and digital breast tomosynthesis (DBT or 3D mammogram) are the two types of mammography imagery that are used in clinical practice for breast cancer detection and diagnosis. Radiologists usually read both imaging modalities in combination; however, existing computer-aided diagnosis tools are designed using only one imaging modality. Inspired by clinical practice, we propose an innovative convolutional neural network (CNN) architecture for breast cancer classification, which uses both 2D and 3D mammograms, simultaneously. Our experiment shows that the proposed method significantly improves the performance of breast cancer classification. By assembling three CNN classifiers, the proposed model achieves 0.97 AUC, which is 34.72% higher than the methods using only one imaging modality.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Learning a Dynamic Map of Visual Appearance

The appearance of the world varies dramatically not only from place to place but also from hour to hour and month to month. Every day billions of images capture this complex relationship, many of which are associated with precise time and location metadata. We propose to use these images to construct a global-scale, dynamic map of visual appearance attributes. Such a map enables fine-grained understanding of the expected appearance at any geographic location and time. Our approach integrates dense overhead imagery with location and time metadata into a general framework capable of mapping a wide variety of visual attributes. A key feature of our approach is that it requires no manual data annotation. We demonstrate how this approach can support various applications, including image-driven mapping, image geolocalization, and metadata verification.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

RasterNet: Modeling Free-Flow Speed using LiDAR and Overhead Imagery

Roadway free-flow speed captures the typical vehicle speed in low traffic conditions. Modeling free-flow speed is an important problem in transportation engineering with applications to a variety of design, operation, planning, and policy decisions of highway systems. Unfortunately, collecting large-scale historical traffic speed data is expensive and time consuming. Traditional approaches for estimating free-flow speed use geometric properties of the underlying road segment, such as grade, curvature, lane width, lateral clearance and access point density, but for many roads such features are unavailable. We propose a fully automated approach, RasterNet, for estimating free-flow speed without the need for explicit geometric features. RasterNet is a neural network that fuses large-scale overhead imagery and aerial LiDAR point clouds using a geospatially consistent raster structure. To support training and evaluation, we introduce a novel dataset combining free-flow speeds of road segments, overhead imagery, and LiDAR point clouds across the state of Kentucky. Our method achieves state-of-the-art results on a benchmark dataset.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Single Image Cloud Detection via Multi-Image Fusion

Artifacts in imagery captured by remote sensing, such as clouds, snow, and shadows, present challenges for various tasks, including semantic segmentation and object detection. A primary challenge in developing algorithms for identifying such artifacts is the cost of collecting annotated training data. In this work, we explore how recent advances in multi-image fusion can be leveraged to bootstrap single image cloud detection. We demonstrate that a network optimized to estimate image quality also implicitly learns to detect clouds. To support the training and evaluation of our approach, we collect a large dataset of Sentinel-2 images along with a per-pixel semantic labelling for land cover. Through various experiments, we demonstrate that our method reduces the need for annotated training data and improves cloud detection performance.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Unsupervised Domain Adaptation for Mammogram Image Classification: A Promising Tool for Model Generalization

Generalization is one of the key challenges in the clinical validation and application of deep learning models to medical images. Studies have shown that such models trained on publicly available datasets often do not work well on real-world clinical data due to the differences in patient population and image device configurations. Also, manually annotating clinical images is expensive. In this work, we propose an unsupervised domain adaptation (UDA) method using Cycle-GAN to improve the generalization ability of the model without using any additional manual annotations.

0 citations0 reviewsNo code linkedOpen access