BZPEERReading, trust and collaboration for research
Menu

Discover

GraphFollow connections around a paper, topic or saved view.

Workspaces

HomePick up where your research flow left off.InboxHandle requests, replies and notifications from one place.CollectionsCurate reading lists, evidence sets and shareable dossiers.ResearchSee your private provenance graph, trail and imports.CollaborationMove from discovery into focused discussion rooms.PublishDraft, preview and publish full-text research articles.

Network

ExpertsFind specialists worth following or asking for help.CommunitiesJoin research circles organized around shared work.PartnersSee external organizations active around the same topics.

Opportunities

ListingsBrowse roles, calls and collaborations with clearer fit signals.

Account

Log inReturn to your reading and collaboration workspace.Create accountStart saving work, following people and joining teams.
Log inCreate account

Researcher profile

Muhao Chen

Muhao Chen contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Computation and LanguageArtificial IntelligenceMachine LearningComputer VisionInformation Retrievaleess.SYSystems and ControlBiomoleculesDatabasesGenomicsHuman-Computer InteractionMolecular NetworksMultiagent Systemsphysics.app-phSoftware EngineeringSound

Trust snapshot

Quick read

Trust 21 - EmergingVerification L1Unclaimed author
27works
0followers
16topics
4close collaborators

Actions

Decide how to stay connected

Follow researcher0

Identity and collaboration

How to connect with this researcher

Claiming links this public author record to a researcher profile and unlocks direct collaboration workflows.

Log in to claim

Direct collaboration

Open a focused conversation when the fit is right

Claim this author entity first to unlock direct invitations.

Research graph

See the researcher in context

Open full explorer

Inspect adjacent work, topics, institutions and collaborators without jumping out to a separate graph page.

Building this graph slice

BZPEER is loading the nearby papers, people, topics and institutions for this page.

Published work

27 published item(s)

preprint2026arXiv

AQuaUI: Visual Token Reduction for GUI Agents with Adaptive Quadtrees

Large Multimodal Models (LMMs) have recently emerged as promising backbones for GUI-agent models, where high-resolution GUI screenshots are introduced to the prompts at each iteration step. However, these screenshots exhibit highly non-uniform spatial information density: large regions may carry little information and are visually homogeneous, while key text and icons may require high visual fidelity. Existing approaches to this problem either require additional training or rely on attention-based token compression, ignoring the structured layout and spatial redundancy of GUI screenshots. To fill the gap, this paper proposes AquaUI, a training-free inference-time token reduction method for GUI agent models that utilizes the non-uniform information density in screenshots. AQuaUI constructs an adaptive quadtree on each screenshot input and keeps one representative merged token per leaf of the quadtree. AQuaUI preserves the spatial positions of retained tokens throughout the pipeline to ensure that all position-encoding stages remain consistent. To further improve temporal consistency across multi-step GUI interactions, we propose a conditional quadtree algorithm that leverages the continuity between consecutive screenshots within a single request. Specifically, it refines the current quadtree using previous quadtrees as references, helping preserve fine-grained regions across static or mildly shifted GUI states. We implement AQuaUI on state-of-the-art GUI agent models and conduct experiments on standard grounding and navigational benchmarks. AQuaUI consistently shows improved accuracy-efficiency trade-offs over prior baselines. Notably, on GUI-Owl-1.5-32B-Instruct, AQuaUI achieves up to 13.22% speedup and 29.52% fewer visual tokens while retaining 99.06% of full-token performance, suggesting that the spatial redundancy of GUI screenshots can be exploited at inference without retraining.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

Automating API Documentation from Crowdsourced Knowledge

API documentation is crucial for developers to learn and use APIs. However, it is known that many official API documents are obsolete and incomplete. To address this challenge, we propose a new approach called AutoDoc that generates API documents with API knowledge extracted from online discussions on Stack Overflow (SO). AutoDoc leverages a fine-tuned dense retrieval model to identify seven types of API knowledge from SO posts. Then, it uses GPT-4o to summarize the API knowledge in these posts into concise text. Meanwhile, we designed two specific components to handle LLM hallucination and redundancy in generated content. We evaluated AutoDoc against five comparison baselines on 48 APIs of different popularity levels. Our results indicate that the API documents generated by AutoDoc are up to 77.7% more accurate, 9.5% less duplicated, and contain 34.4% knowledge uncovered by the official documents. We also measured the sensitivity of AutoDoc to the choice of different LLMs. We found that while larger LLMs produce higher-quality API documents, AutoDoc enables smaller open-source models (e.g., Mistral-7B-v0.3) to achieve comparable results. Finally, we conducted a user study to evaluate the usefulness of the API documents generated by AutoDoc. All participants found API documents generated by AutoDoc to be more comprehensive, concise, and helpful than the comparison baselines. This highlights the feasibility of utilizing LLMs for API documentation with careful design to counter LLM hallucination and information redundancy.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

GQA-μP: The maximal parameterization update for grouped query attention

Hyperparameter transfer across model architectures dramatically reduces the amount of compute necessary for tuning large language models (LLMs). The maximal update parameterization (μP) ensures transfer through principled mathematical analysis but can be challenging to derive for new model architectures. Building on the spectral feature-learning view of Yang et al. (2023a), we make two advances. First, we promote spectral norm conditions on the weights from a heuristic to the definition of feature learning, and as a consequence arrive at the Complete-P depth and weight-decay scalings without recourse to lazy-learning. Second, we consider a modified spectral norm that preserves the valid scaling law of network weights when weight matrices are not full rank. This enables (to our knowledge, the first) derivation of μP scalings for grouped-query attention (GQA). We demonstrate the efficacy of our theoretical derivations by showing learning rate transfer across the GQA repetition hyperparameter as well as experiments regarding transfer over weight decay.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

ModelLens: Finding the Best for Your Task from Myriads of Models

The open-source model ecosystem now contains hundreds of thousands of pretrained models, yet picking the best model for a new dataset is increasingly infeasible: new models and unbenchmarked datasets emerge continuously, leaving practitioners with no prior records on either side. Existing approaches handle only fragments of this in-the-wild setting: AutoML and transferability estimation select models from small predefined pools or require expensive per-model forward passes on the target dataset, while model routing presupposes a given candidate pool. We introduce ModelLens, a unified framework for model recommendation in the wild. Our key insight is that public leaderboard interactions, though scattered and noisy, collectively trace out an implicit atlas of model capabilities across heterogeneous evaluation settings, a signal rich enough to learn from directly. By learning a performance-aware latent space over model--dataset--metric tuples, ModelLens ranks unseen models on unseen datasets without running candidates on the target dataset. On a new benchmark of 1.62M evaluation records spanning 47K models and 9.6K datasets, ModelLens surpasses baselines that either rely on metadata alone or require running each candidate on the target dataset. Its recommended Top-K pools further improve multiple representative routing methods by up to 81% across diverse QA benchmarks. Case studies on recently released benchmarks further confirm generalization to both text and vision-language tasks.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

SafeLens: Deliberate and Efficient Video Guardrails with Fast-and-Slow Screening

The rapid growth of online video platforms and AI-generated content has made reliable video guardrails a key challenge for safety and real-world deployment. While most videos can be screened through fast pattern recognition, a small subset requires deeper reasoning over temporally complex content and nuanced policy constraints. Existing approaches typically rely on large vision-language models applied uniformly across all inputs, resulting in high inference costs and inefficient allocation of computation. We propose SafeLens, a video guardrail framework that introduces a fast-and-slow inference architecture for efficient and accurate content moderation with variable computational cost across inputs. Additionally, we construct a high-quality dataset by applying influence-guided filtering to the SafeWatch Dataset, retaining only 2.4% of the original data. To further address limitations of training-time scaling, we enable test-time reasoning by augmenting the filtered data with structured Chain-of-Thought traces. Across real-world and AI-generated video benchmarks, SafeLens achieves state-of-the-art performance, outperforming strong open-source video guardrails (e.g., SafeWatch-8B, OmniGuard-7B) and closed-source models (e.g., GPT-5.4, Gemini-3.1-pro) while significantly reducing inference cost, demonstrating that efficient design serves to be more effective than scaling data or model size alone.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

Taming Extreme Tokens: Covariance-Aware GRPO with Gaussian-Kernel Advantage Reweighting

Group Relative Policy Optimization (GRPO) has emerged as a promising approach for improving the reasoning capabilities of large language models. However, it struggles to effectively balance the tradeoff between exploration and exploitation during training, often resulting in suboptimal performance. Motivated by the theoretical insight that changes in entropy are governed by the covariance between token probabilities and their corresponding advantages, we propose a hyperparameter-free, covariance-weighted optimization method that dynamically down-weights extreme token-level updates via a Gaussian kernel. This approach automatically reduces the instability caused by exploration-exploitation trade-off while preserving informative learning signals. Extensive empirical evaluations show that our approach improves downstream performance across reasoning benchmarks compared with GRPO, and effectively stablizes entropy as training progresses.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

Video Models Can Reason with Verifiable Rewards

Video diffusion models have made rapid progress in perceptual realism and temporal coherence, but they remain primarily optimized for plausible generation rather than verifiable reasoning. This limitation is especially pronounced in tasks where generated videos must satisfy explicit spatial, temporal, or logical constraints. Inspired by the role of reinforcement learning with verifiable rewards (RLVR) in reasoning-oriented language models, we introduce VideoRLVR, a practical recipe for optimizing video diffusion models with rule-based feedback. VideoRLVR formulates video reasoning as the generation of verifiable visual trajectories and consists of an SDE-GRPO optimization backbone, dense decomposed rewards, and an Early-Step Focus strategy for efficient training. The Early-Step Focus strategy restricts policy optimization to the early denoising phase, reducing training latency by about 40% while preserving performance. We evaluate VideoRLVR on Maze, FlowFree, and Sokoban, three procedurally generated domains with objective success criteria. Across these tasks, VideoRLVR consistently improves over supervised fine-tuning baselines, with dense decomposed rewards proving especially important in low-success-rate settings. Our RL-optimized model also outperforms the evaluated proprietary and open-source video generation models on these verifiable reasoning benchmarks and out-of-domain benchmarks. These results suggest that verifiable RL can move video models beyond perceptual imitation toward more reliable rule-consistent visual reasoning.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

When Vision Speaks for Sound

Despite rapid progress in video-capable MLLMs, we find that their apparent audio understanding in videos is often vision-driven: models rely on visual cues to infer or hallucinate acoustic information, rather than verifying the audio stream. This issue appears across both state-of-the-art open-source omni models and leading closed-source models from providers such as Google and OpenAI. We characterize this failure mode as an audio-visual Clever Hans effect, in which models appear (falsely) audio-grounded, but actually exploit visual-acoustic correlations without verifying whether the audio and visual streams are truly aligned. To systematically study this behavior, we introduce Thud, an intervention-driven probing framework based on three counterfactual audio edits: Shift, which tests temporal synchronization; Mute, which tests sound existence; and Swap, which tests audio-visual consistency. Beyond diagnosis, we further study a two-stage alignment recipe: intervention-derived preference pairs teach audio verification, while event-level general video preferences regularize the model against over-specialization. Our best 10K-sample recipe improves average performance across the three intervention dimensions by 28 percentage points, while slightly improving performance on general video and audio-visual QA benchmarks.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Bending the Future: Autoregressive Modeling of Temporal Knowledge Graphs in Curvature-Variable Hyperbolic Spaces

Recently there is an increasing scholarly interest in time-varying knowledge graphs, or temporal knowledge graphs (TKG). Previous research suggests diverse approaches to TKG reasoning that uses historical information. However, less attention has been given to the hierarchies within such information at different timestamps. Given that TKG is a sequence of knowledge graphs based on time, the chronology in the sequence derives hierarchies between the graphs. Furthermore, each knowledge graph has its hierarchical level which may differ from one another. To address these hierarchical characteristics in TKG, we propose HyperVC, which utilizes hyperbolic space that better encodes the hierarchies than Euclidean space. The chronological hierarchies between knowledge graphs at different timestamps are represented by embedding the knowledge graphs as vectors in a common hyperbolic space. Additionally, diverse hierarchical levels of knowledge graphs are represented by adjusting the curvatures of hyperbolic embeddings of their entities and relations. Experiments on four benchmark datasets show substantial improvements, especially on the datasets with higher hierarchical levels.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Contextualized Scene Imagination for Generative Commonsense Reasoning

Humans use natural language to compose common concepts from their environment into plausible, day-to-day scene descriptions. However, such generative commonsense reasoning (GCSR) skills are lacking in state-of-the-art text generation methods. Descriptive sentences about arbitrary concepts generated by neural text generation models (e.g., pre-trained text-to-text Transformers) are often grammatically fluent but may not correspond to human common sense, largely due to their lack of mechanisms to capture concept relations, to identify implicit concepts, and to perform generalizable reasoning about unseen concept compositions. In this paper, we propose an Imagine-and-Verbalize (I&V) method, which learns to imagine a relational scene knowledge graph (SKG) with relations between the input concepts, and leverage the SKG as a constraint when generating a plausible scene description. We collect and harmonize a set of knowledge resources from different domains and modalities, providing a rich auxiliary supervision signal for I&V. The experiments demonstrate the effectiveness of I&V in improving language models on both concept-to-sentence and concept-to-story generation tasks, while enabling the model to learn well from fewer task examples and generate SKGs that make common sense to human annotators.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Dangling-Aware Entity Alignment with Mixed High-Order Proximities

We study dangling-aware entity alignment in knowledge graphs (KGs), which is an underexplored but important problem. As different KGs are naturally constructed by different sets of entities, a KG commonly contains some dangling entities that cannot find counterparts in other KGs. Therefore, dangling-aware entity alignment is more realistic than the conventional entity alignment where prior studies simply ignore dangling entities. We propose a framework using mixed high-order proximities on dangling-aware entity alignment. Our framework utilizes both the local high-order proximity in a nearest neighbor subgraph and the global high-order proximity in an embedding space for both dangling detection and entity alignment. Extensive experiments with two evaluation settings shows that our framework more precisely detects dangling entities, and better aligns matchable entities. Further investigations demonstrate that our framework can mitigate the hubness problem on dangling-aware entity alignment.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Design and control analysis of a deployable clustered hyperbolic paraboloid cable net

This paper presents an analytical and experimental design and deployment control analysis of a hyperbolic paraboloid cable net based on clustering actuation strategies. First, the dynamics and statics for clustered tensegrity structures (CTS) are given. Then, we propose the topology design of the deployable hyperbolic paraboloid cable net. The deployability of the cable net is achieved by using clustered cables. It is shown that the clustered cables significantly reduce the number of actuators required for control. The deployment trajectory and actuation prestress in the cables are designed to ensure the tensions are feasible during the deployment process. Then, we compare the deployment analysis's open-loop and closed-loop control strategies. Finally, a lab-scale model is constructed to validate the actuation laws. We test the static performance and deployment process of the experimental model. Results show that the closed-loop control approach is more stable and smoother than the open-loop one in the deployment process. The approaches developed in this paper can also be used for various deployable tensegrity structures.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Equilibrium and stiffness study of clustered tensegrity structures with the consideration of pulley sizes

This paper presents the equilibrium and stiffness study of clustered tensegrity structures (CTS) considering pulley sizes. We first derive the geometric relationship between clustered strings and pulleys, where the nodal vector is chosen as the generalized coordinate. Then, the equilibrium equations of the clustered tensegrity structure with pulleys based on the Lagrangian method are given. Since the stiffness of a structure is usually weakened when using clustering strings, we formulate the tangent stiffness matrix equations for analysis. It is also shown that as pulley sizes go to zero, the governing equations of the clustered tensegrity system with pulleys yield to the classical clustered tensegrity structure without pulleys, which is consistent with the existing literature. Three examples are demonstrated to validate the given theory. The proposed method allows one to conduct equilibrium, stiffness, and robustness studies of cluster tensegrity structures with pulleys. Nevertheless, the approach developed in this paper is not limited to the tensegrity structures. It can also be applied to a wide range of applications with pulley-rope systems, such as drilling rigs, ocean platform anchors, and cargo cranes.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

GRAPHCACHE: Message Passing as Caching for Sentence-Level Relation Extraction

Entity types and textual context are essential properties for sentence-level relation extraction (RE). Existing work only encodes these properties within individual instances, which limits the performance of RE given the insufficient features in a single sentence. In contrast, we model these properties from the whole dataset and use the dataset-level information to enrich the semantics of every instance. We propose the GRAPHCACHE (Graph Neural Network as Caching) module, that propagates the features across sentences to learn better representations for RE. GRAPHCACHE aggregates the features from sentences in the whole dataset to learn global representations of properties, and use them to augment the local features within individual sentences. The global property features act as dataset-level prior knowledge for RE, and a complement to the sentence-level features. Inspired by the classical caching technique in computer systems, we develop GRAPHCACHE to update the property representations in an online manner. Overall, GRAPHCACHE yields significant effectiveness gains on RE and enables efficient message passing across all sentences in the dataset.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Prix-LM: Pretraining for Multilingual Knowledge Base Construction

Knowledge bases (KBs) contain plenty of structured world and commonsense knowledge. As such, they often complement distributional text-based information and facilitate various downstream tasks. Since their manual construction is resource- and time-intensive, recent efforts have tried leveraging large pretrained language models (PLMs) to generate additional monolingual knowledge facts for KBs. However, such methods have not been attempted for building and enriching multilingual KBs. Besides wider application, such multilingual KBs can provide richer combined knowledge than monolingual (e.g., English) KBs. Knowledge expressed in different languages may be complementary and unequally distributed: this implies that the knowledge available in high-resource languages can be transferred to low-resource ones. To achieve this, it is crucial to represent multilingual knowledge in a shared/unified space. To this end, we propose a unified representation model, Prix-LM, for multilingual KB construction and completion. We leverage two types of knowledge, monolingual triples and cross-lingual links, extracted from existing multilingual KBs, and tune a multilingual language encoder XLM-R via a causal language modeling objective. Prix-LM integrates useful multilingual and KB-based factual knowledge into a single model. Experiments on standard entity-related tasks, such as link prediction in multiple languages, cross-lingual entity linking and bilingual lexicon induction, demonstrate its effectiveness, with gains reported over strong task-specialised baselines.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Robust (Controlled) Table-to-Text Generation with Structure-Aware Equivariance Learning

Controlled table-to-text generation seeks to generate natural language descriptions for highlighted subparts of a table. Previous SOTA systems still employ a sequence-to-sequence generation method, which merely captures the table as a linear structure and is brittle when table layouts change. We seek to go beyond this paradigm by (1) effectively expressing the relations of content pieces in the table, and (2) making our model robust to content-invariant structural transformations. Accordingly, we propose an equivariance learning framework, which encodes tables with a structure-aware self-attention mechanism. This prunes the full self-attention structure into an order-invariant graph attention that captures the connected graph structure of cells belonging to the same row or column, and it differentiates between relevant cells and irrelevant cells from the structural perspective. Our framework also modifies the positional encoding mechanism to preserve the relative position of tokens in the same cell but enforce position invariance among different cells. Our technology is free to be plugged into existing table-to-text generation models, and has improved T5-based models to offer better performance on ToTTo and HiTab. Moreover, on a harder version of ToTTo, we preserve promising performance, while previous SOTA systems, even with transformation-based data augmentation, have seen significant performance drops. Our code is available at https://github.com/luka-group/Lattice.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Should We Rely on Entity Mentions for Relation Extraction? Debiasing Relation Extraction with Counterfactual Analysis

Recent literature focuses on utilizing the entity information in the sentence-level relation extraction (RE), but this risks leaking superficial and spurious clues of relations. As a result, RE still suffers from unintended entity bias, i.e., the spurious correlation between entity mentions (names) and relations. Entity bias can mislead the RE models to extract the relations that do not exist in the text. To combat this issue, some previous work masks the entity mentions to prevent the RE models from overfitting entity mentions. However, this strategy degrades the RE performance because it loses the semantic information of entities. In this paper, we propose the CORE (Counterfactual Analysis based Relation Extraction) debiasing method that guides the RE models to focus on the main effects of textual context without losing the entity information. We first construct a causal graph for RE, which models the dependencies between variables in RE models. Then, we propose to conduct counterfactual analysis on our causal graph to distill and mitigate the entity bias, that captures the causal effects of specific entity mentions in each instance. Note that our CORE method is model-agnostic to debias existing RE systems during inference without changing their training processes. Extensive experimental results demonstrate that our CORE yields significant gains on both effectiveness and generalization for RE. The source code is provided at: https://github.com/vanoracai/CoRE.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Ultra-fine Entity Typing with Indirect Supervision from Natural Language Inference

The task of ultra-fine entity typing (UFET) seeks to predict diverse and free-form words or phrases that describe the appropriate types of entities mentioned in sentences. A key challenge for this task lies in the large amount of types and the scarcity of annotated data per type. Existing systems formulate the task as a multi-way classification problem and train directly or distantly supervised classifiers. This causes two issues: (i) the classifiers do not capture the type semantics since types are often converted into indices; (ii) systems developed in this way are limited to predicting within a pre-defined type set, and often fall short of generalizing to types that are rarely seen or unseen in training. This work presents LITE, a new approach that formulates entity typing as a natural language inference (NLI) problem, making use of (i) the indirect supervision from NLI to infer type information meaningfully represented as textual hypotheses and alleviate the data scarcity issue, as well as (ii) a learning-to-rank objective to avoid the pre-defining of a type set. Experiments show that, with limited training data, LITE obtains state-of-the-art performance on the UFET task. In addition, LITE demonstrates its strong generalizability, by not only yielding best results on other fine-grained entity typing benchmarks, more importantly, a pre-trained LITE system works well on new data containing unseen types.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Unified Semantic Typing with Meaningful Label Inference

Semantic typing aims at classifying tokens or spans of interest in a textual context into semantic categories such as relations, entity types, and event types. The inferred labels of semantic categories meaningfully interpret how machines understand components of text. In this paper, we present UniST, a unified framework for semantic typing that captures label semantics by projecting both inputs and labels into a joint semantic embedding space. To formulate different lexical and relational semantic typing tasks as a unified task, we incorporate task descriptions to be jointly encoded with the input, allowing UniST to be adapted to different tasks without introducing task-specific model components. UniST optimizes a margin ranking loss such that the semantic relatedness of the input and labels is reflected from their embedding similarity. Our experiments demonstrate that UniST achieves strong performance across three semantic typing tasks: entity typing, relation classification and event typing. Meanwhile, UniST effectively transfers semantic knowledge of labels and substantially improves generalizability on inferring rarely seen and unseen types. In addition, multiple semantic typing tasks can be jointly trained within the unified framework, leading to a single compact multi-tasking model that performs comparably to dedicated single-task models, while offering even better transferability.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Bio-JOIE: Joint Representation Learning of Biological Knowledge Bases

The widespread of Coronavirus has led to a worldwide pandemic with a high mortality rate. Currently, the knowledge accumulated from different studies about this virus is very limited. Leveraging a wide-range of biological knowledge, such as gene ontology and protein-protein interaction (PPI) networks from other closely related species presents a vital approach to infer the molecular impact of a new species. In this paper, we propose the transferred multi-relational embedding model Bio-JOIE to capture the knowledge of gene ontology and PPI networks, which demonstrates superb capability in modeling the SARS-CoV-2-human protein interactions. Bio-JOIE jointly trains two model components. The knowledge model encodes the relational facts from the protein and GO domains into separated embedding spaces, using a hierarchy-aware encoding technique employed for the GO terms. On top of that, the transfer model learns a non-linear transformation to transfer the knowledge of PPIs and gene ontology annotations across their embedding spaces. By leveraging only structured knowledge, Bio-JOIE significantly outperforms existing state-of-the-art methods in PPI type prediction on multiple species. Furthermore, we also demonstrate the potential of leveraging the learned representations on clustering proteins with enzymatic function into enzyme commission families. Finally, we show that Bio-JOIE can accurately identify PPIs between the SARS-CoV-2 proteins and human proteins, providing valuable insights for advancing research on this new disease.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Contrastive Out-of-Distribution Detection for Pretrained Transformers

Pretrained Transformers achieve remarkable performance when training and test data are from the same distribution. However, in real-world scenarios, the model often faces out-of-distribution (OOD) instances that can cause severe semantic shift problems at inference time. Therefore, in practice, a reliable model should identify such instances, and then either reject them during inference or pass them over to models that handle another distribution. In this paper, we develop an unsupervised OOD detection method, in which only the in-distribution (ID) data are used in training. We propose to fine-tune the Transformers with a contrastive loss, which improves the compactness of representations, such that OOD instances can be better differentiated from ID ones. These OOD instances can then be accurately detected using the Mahalanobis distance in the model's penultimate layer. We experiment with comprehensive settings and achieve near-perfect OOD detection performance, outperforming baselines drastically. We further investigate the rationales behind the improvement, finding that more compact representations through margin-based contrastive learning bring the improvement. We release our code to the community for future research.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Cross-lingual Entity Alignment with Incidental Supervision

Much research effort has been put to multilingual knowledge graph (KG) embedding methods to address the entity alignment task, which seeks to match entities in different languagespecific KGs that refer to the same real-world object. Such methods are often hindered by the insufficiency of seed alignment provided between KGs. Therefore, we propose an incidentally supervised model, JEANS , which jointly represents multilingual KGs and text corpora in a shared embedding scheme, and seeks to improve entity alignment with incidental supervision signals from text. JEANS first deploys an entity grounding process to combine each KG with the monolingual text corpus. Then, two learning processes are conducted: (i) an embedding learning process to encode the KG and text of each language in one embedding space, and (ii) a selflearning based alignment learning process to iteratively induce the matching of entities and that of lexemes between embeddings. Experiments on benchmark datasets show that JEANS leads to promising improvement on entity alignment with incidental supervision, and significantly outperforms state-of-the-art methods that solely rely on internal information of KGs.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Learning from History: Modeling Temporal Knowledge Graphs with Sequential Copy-Generation Networks

Large knowledge graphs often grow to store temporal facts that model the dynamic relations or interactions of entities along the timeline. Since such temporal knowledge graphs often suffer from incompleteness, it is important to develop time-aware representation learning models that help to infer the missing temporal facts. While the temporal facts are typically evolving, it is observed that many facts often show a repeated pattern along the timeline, such as economic crises and diplomatic activities. This observation indicates that a model could potentially learn much from the known facts appeared in history. To this end, we propose a new representation learning model for temporal knowledge graphs, namely CyGNet, based on a novel timeaware copy-generation mechanism. CyGNet is not only able to predict future facts from the whole entity vocabulary, but also capable of identifying facts with repetition and accordingly predicting such future facts with reference to the known facts in the past. We evaluate the proposed method on the knowledge graph completion task using five benchmark datasets. Extensive experiments demonstrate the effectiveness of CyGNet for predicting future facts with repetition as well as de novo fact prediction.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Learning from Noisy Labels for Entity-Centric Information Extraction

Recent information extraction approaches have relied on training deep neural models. However, such models can easily overfit noisy labels and suffer from performance degradation. While it is very costly to filter noisy labels in large learning resources, recent studies show that such labels take more training steps to be memorized and are more frequently forgotten than clean labels, therefore are identifiable in training. Motivated by such properties, we propose a simple co-regularization framework for entity-centric information extraction, which consists of several neural models with identical structures but different parameter initialization. These models are jointly optimized with the task-specific losses and are regularized to generate similar predictions based on an agreement loss, which prevents overfitting on noisy labels. Extensive experiments on two widely used but noisy benchmarks for information extraction, TACRED and CoNLL03, demonstrate the effectiveness of our framework. We release our code to the community for future research.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

ReadNet: A Hierarchical Transformer Framework for Web Article Readability Analysis

Analyzing the readability of articles has been an important sociolinguistic task. Addressing this task is necessary to the automatic recommendation of appropriate articles to readers with different comprehension abilities, and it further benefits education systems, web information systems, and digital libraries. Current methods for assessing readability employ empirical measures or statistical learning techniques that are limited by their ability to characterize complex patterns such as article structures and semantic meanings of sentences. In this paper, we propose a new and comprehensive framework which uses a hierarchical self-attention model to analyze document readability. In this model, measurements of sentence-level difficulty are captured along with the semantic meanings of each sentence. Additionally, the sentence-level features are incorporated to characterize the overall readability of an article with consideration of article structures. We evaluate our proposed approach on three widely-used benchmark datasets against several strong baseline approaches. Experimental results show that our proposed method achieves the state-of-the-art performance on estimating the readability for various web articles and literature.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

A Benchmarking Study of Embedding-based Entity Alignment for Knowledge Graphs

Entity alignment seeks to find entities in different knowledge graphs (KGs) that refer to the same real-world object. Recent advancement in KG embedding impels the advent of embedding-based entity alignment, which encodes entities in a continuous embedding space and measures entity similarities based on the learned embeddings. In this paper, we conduct a comprehensive experimental study of this emerging field. We survey 23 recent embedding-based entity alignment approaches and categorize them based on their techniques and characteristics. We also propose a new KG sampling algorithm, with which we generate a set of dedicated benchmark datasets with various heterogeneity and distributions for a realistic evaluation. We develop an open-source library including 12 representative embedding-based entity alignment approaches, and extensively evaluate these approaches, to understand their strengths and limitations. Additionally, for several directions that have not been explored in current approaches, we perform exploratory experiments and report our preliminary findings for future studies. The benchmark datasets, open-source library and experimental results are all accessible online and will be duly maintained.

0 citations0 reviewsNo code linkedOpen access
preprint2019arXiv

Learning Bilingual Word Embeddings Using Lexical Definitions

Bilingual word embeddings, which representlexicons of different languages in a shared em-bedding space, are essential for supporting se-mantic and knowledge transfers in a variety ofcross-lingual NLP tasks. Existing approachesto training bilingual word embeddings requireoften require pre-defined seed lexicons that areexpensive to obtain, or parallel sentences thatcomprise coarse and noisy alignment. In con-trast, we propose BilLex that leverages pub-licly available lexical definitions for bilingualword embedding learning. Without the needof predefined seed lexicons, BilLex comprisesa novel word pairing strategy to automati-cally identify and propagate the precise fine-grained word alignment from lexical defini-tions. We evaluate BilLex in word-level andsentence-level translation tasks, which seek tofind the cross-lingual counterparts of wordsand sentences respectively.BilLex signifi-cantly outperforms previous embedding meth-ods on both tasks.

0 citations0 reviewsNo code linkedOpen access