Source author record

Mitsusuke Tarama

Mitsusuke Tarama appears in the imported research catalog. Authorship, coauthor and topic links are available while profile ownership is still unclaimed.

ResearcherUnclaimed source record

cond-mat.soft Biological Physics nlin.PS Cell Behavior

Catalog footprint

What is connected

7works

4topics

4close collaborators

Actions

Connect this record

Open graph Browse works

Inspect adjacent papers, topics, institutions and collaborators without losing the researcher page.

Building this map preview

BZPEER is loading the nearby papers, people, topics and institutions for this page.

preprint2026arXiv

Cellular-scale mechanism of cell crawling responding to substrate stiffness

Biological cells are able to adapt their behaviour in response to environmental cues. Durotaxis is a phenomenon in which cells adjust their migration depending on the mechanical properties of a surrounding substrate. Although durotaxis has been studied more than two decades, basic cellular-scale mechanism of how cells regulate the motility responding to substrate stiffness remains to be elucidated. We address this issue by developing a theory utilising a mechanochemical model that integrates intracellular biochemical reactions with cellular deformation and substrate adhesion. Numerical analysis reveals that the characteristic speed and diffusion constant of cells change non-monotonically with respect to substrate stiffness, indicating the emergence of an optimal stiffness for migration. In addition, by introducing a memory effect that allows feedback from cell mechanics to the intracellular chemical reactions, the persistence time increases with substrate stiffness on a substrate softer than the optimal. We further investigate theoretically the origin of the non-monotonic dependence, that is comparable to the experimental observations, in terms of cell deformation and symmetry breaking in substrate adhesion. We believe that our study provides a unifying framework to understand complex durotactic cell migration.

preprint2015arXiv

Simple model of cell crawling

Based on symmetry consideration of migration and shape deformations, we formulate phenomenologically the dynamics of cell crawling in two dimensions. Forces are introduced to change the cell shape. The shape deformations induce migration of the cell on a substrate. For time-independent forces we show that not only a stationary motion but also a limit cycle oscillation of the migration velocity and the shape occurs as a result of nonlinear coupling between different deformation modes. Time-dependent forces are generated in a stochastic manner by utilizing the so-called coherence resonance of an excitable system. The present coarse-grained model has a flexibility that it can be applied, e.g., both to keratocyte cells and to Dictyostelium cells, which exhibit quite different dynamics from each other. The key factors for the motile behavior inherent in each cell type are identified in our model.

preprint2014arXiv

A deformable microswimmer in a swirl: capturing and scattering dynamics

Inspired by the classical Kepler and Rutherford problem, we investigate an analogous set-up in the context of active microswimmers: the behavior of a deformable microswimmer in a swirl flow. First we identify new steady bound states in the swirl flow and analyze their stability. Second we study the dynamics of a self-propelled swimmer heading towards the vortex center, and we observe the subsequent capturing and scattering dynamics. We distinguish between two major types of swimmers, those that tend to elongate perpendicularly to the propulsion direction and those that pursue a parallel elongation. While the first ones can get caught by the swirl, the second ones were always observed to be scattered, which proposes a promising escape strategy. This offers a route to design artificial microswimmers that show the desired behavior in complicated flow fields. It should be straightforward to verify our results in a corresponding quasi-two-dimensional experiment using self-propelled droplets on water surfaces.

preprint2014arXiv

Tunable dynamic response of magnetic gels: impact of structural properties and magnetic fields

Ferrogels and magnetic elastomers feature mechanical properties that can be reversibly tuned from outside through magnetic fields. Here we concentrate on the question how their dynamic response can be adjusted. The influence of three factors on the dynamic behavior is demonstrated using appropriate minimal models: first, the orientational memory imprinted into one class of the materials during their synthesis; second, the structural arrangement of the magnetic particles in the materials; and third, the strength of an external magnetic field. To illustrate the latter point, structural data are extracted from a real experimental sample and analyzed. Understanding how internal structural properties and external influences impact the dominant dynamical properties helps to design materials that optimize the requested behavior.

preprint2013arXiv

Dynamics of a deformable active particle under shear flow

The motion of a deformable active particle in linear shear flow is explored theoretically. Based on symmetry considerations, in two spatial dimensions, we propose coupled nonlinear dynamical equations for the particle position, velocity, deformation, and rotation. In our model, both, passive rotations induced by the shear flow as well as active spinning motions, are taken into account. Our equations reduce to known models in the two limits of vanishing shear flow and vanishing particle deformability. For varied shear rate and particle propulsion speed, we solve the equations numerically and obtain a manifold of different dynamical modes including active straight motion, periodic motions, motions on undulated cycloids, winding motions, as well as quasi-periodic and chaotic motions induced at high shear rates. The types of motion are distinguished by different characteristics in the real-space trajectories and in the dynamical behavior of the particle orientation and its deformation. Our predictions can be verified in experiments on self-propelled droplets exposed to a linear shear flow.

preprint2012arXiv

Spinning motion of a deformable self-propelled particle in two dimensions

We investigate the dynamics of a single deformable self-propelled particle which undergoes a spinning motion in a two-dimensional space. Equations of motion are derived from the symmetry argument for three kinds of variables. One is a vector which represents the velocity of the centre of mass. The second is a traceless symmetric tensor representing deformation. The third is an antisymmetric tensor for spinning degree of freedom. By numerical simulations, we have obtained variety of dynamical states due to interplay between the spinning motion and the deformation. The bifurcations of these dynamical states are analyzed by the simplified equations of motion.

preprint2011arXiv

Dynamics of a deformable self-propelled particle under external forcing

We investigate dynamics of a self-propelled deformable particle under external field in two dimensions based on the model equations for the center of mass and a tensor variable characterizing deformations. We consider two kinds of external force. One is a gravitational-like force which enters additively in the time-evolution equation for the center of mass. The other is an electric-like force supposing that a dipole moment is induced in the particle. This force is added to the equation for the deformation tensor. It is shown that a rich variety of dynamics appears by changing the strength of the forces and the migration velocity of self-propelled particle.