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Minheng Chen

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2 published item(s)

preprint2026arXiv

Gyral-Sulcal-Net: An Integrated Network Representation of Brain Folding Patterns

Our brain functions as a complex communication network, and studying it from a network perspective offers valuable insights into its organizational principles and links to cognitive functions and brain disorders. However, most current network studies typically use brain regions as nodes, often overlooking the intricate folding patterns of finer-scale anatomical landmarks within these regions. In this study, we introduce a novel approach to integrate the brain's two primary folding patterns - gyri and sulci - into a unified network termed the Gyral-Sulcal-Net (GS-Net), in which three different types of finer-scale landmarks have been successfully identified. We evaluated the proposed GS-Net across multiple datasets, comprising over 1,600 brains, spanning different age groups (from 34 gestational weeks to elderly adults) and cohorts (healthy brains and those with pathological conditions). The experimental results demonstrate that the GS-Net can effectively integrate and represent diverse cortical folding patterns from a network perspective. More importantly, this approach offers a promising way for integrating different folding patterns into a unified anatomical brain network, alongside structural and functional networks, providing a comprehensive framework for studying brain networks.

preprint2026arXiv

Learning Cross-Atlas Consistent Brain Disorder Representations via Disentangled Multi-Atlas Functional Connectivity Learning

Functional connectivity (FC) derived from resting-state fMRI is widely used to characterize large-scale brain network alterations in neurological and psychiatric disorders. However, FC construction critically depends on the choice of brain atlas, and different parcellations may emphasize distinct organizational features, leading to heterogeneous and sometimes inconsistent representations. Existing multi-atlas approaches partially alleviate this issue but often fuse atlas-derived features or predictions at a relatively shallow level, while single-atlas disentanglement methods do not explicitly address cross-atlas heterogeneity. We propose Multi-Atlas Disentangled Connectivity LEarning (MADCLE), a multi-branch representation learning framework that jointly encodes FC matrices derived from different brain atlases. Rather than introducing a single explicitly shared latent variable across parcellations, MADCLE learns atlas-wise disease-related representations and encourages them to be cross-atlas consistent through distributional alignment. Meanwhile, covariate-related and atlas-dependent residual factors are modeled separately using covariate similarity supervision, atlas-specific reconstruction, and decorrelation constraints, thereby reducing the leakage of non-disease and parcellation-dependent information into the disease-related embeddings. Experiments on the ADNI and ADHD-200 datasets suggest that MADCLE achieves competitive or improved performance compared with single-atlas baselines, multi-atlas GNN/Transformer models, and recent multi-atlas consistency frameworks. These results support the potential value of structured disentanglement for FC-based disorder identification under heterogeneous parcellation schemes.