Researcher profile

Miguel A. Bessa

Miguel A. Bessa contributes to research discovery and scholarly infrastructure.

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Published work

3 published item(s)

preprint2026arXiv

TIDES: Implicit Time-Awareness in Selective State Space Models

Selective state space models (SSMs), such as Mamba, achieve strong per-token expressivity by making the time discretization step $\TildeΔ$ a learned function of the input. However, in doing so, $\TildeΔ$ ceases to represent a physical sampling interval, limiting its irregular time series modeling capability. Continuous-time SSMs, such as S5, preserve the physical meaning of $\TildeΔ$ and handle irregular timestamps natively ($\TildeΔ\equivΔ)$, but their dynamics remain linear time-invariant (LTI), limiting per-token expressivity. We propose \textbf{TIDES}, a selective SSM variant that reconciles selective and continuous architectures by moving input-dependence off the step size and onto the diagonal state matrix. As a result, $\TildeΔ$ retains its physical meaning, tied to the state discretization, allowing the model to handle irregular timestamps natively without sacrificing the per-token expressivity that makes selective SSMs effective. We show this on a novel \emph{Fading Flash} experimental benchmark, a compact controlled diagnostic for sequence models that jointly tests input-dependence and extrapolation to out-of-distribution $Δ$ values, and isolates the distinct failure modes of current state-of-the-art architectures that TIDES avoids by construction. On large-scale benchmarks, TIDES sets the new state-of-the-art average rank on UEA time-series classification and the Physiome-ODE regression benchmark. Code available at: https://github.com/TaylanSoydan/TIDES.

preprint2025arXiv

Integrated Experiment and Simulation Co-Design: A Key Infrastructure for Predictive Mesoscale Materials Modeling

The design of structural & functional materials for specialized applications is being fueled by rapid advancements in materials synthesis, characterization, manufacturing, with sophisticated computational materials modeling frameworks that span a wide spectrum of length & time scales in the mesoscale between atomistic & continuum approaches. This is leading towards a systems-based design methodology that will replace traditional empirical approaches, embracing the principles of the Materials Genome Initiative. However, several gaps remain in this framework as it relates to advanced structural materials:(1) limited availability & access to high-fidelity experimental & computational datasets, (2) lack of co-design of experiments & simulation aimed at computational model validation,(3) lack of on-demand access to verified and validated codes for simulation and for experimental analyses, & (4) limited opportunities for workforce training and educational outreach. These shortcomings stifle major innovations in structural materials design. This paper describes plans for a community-driven research initiative that addresses current gaps based on best-practice recommendations of leaders in mesoscale modeling, experimentation & cyberinfrastructure obtained at an NSF-sponsored workshop dedicated to this topic. The proposal is to create a hub for Mesoscale Experimentation and Simulation co-Operation (hMESO)-that will (I) provide curation and sharing of models, data, & codes, (II) foster co-design of experiments for model validation with systematic uncertainty quantification, & (III) provide a platform for education & workforce development. It will engage experimental & computational experts in mesoscale mechanics and plasticity, along with mathematicians and computer scientists with expertise in algorithms, data science, machine learning, & large-scale cyberinfrastructure initiatives.

preprint2023arXiv

Continual Prune-and-Select: Class-incremental learning with specialized subnetworks

The human brain is capable of learning tasks sequentially mostly without forgetting. However, deep neural networks (DNNs) suffer from catastrophic forgetting when learning one task after another. We address this challenge considering a class-incremental learning scenario where the DNN sees test data without knowing the task from which this data originates. During training, Continual-Prune-and-Select (CP&S) finds a subnetwork within the DNN that is responsible for solving a given task. Then, during inference, CP&S selects the correct subnetwork to make predictions for that task. A new task is learned by training available neuronal connections of the DNN (previously untrained) to create a new subnetwork by pruning, which can include previously trained connections belonging to other subnetwork(s) because it does not update shared connections. This enables to eliminate catastrophic forgetting by creating specialized regions in the DNN that do not conflict with each other while still allowing knowledge transfer across them. The CP&S strategy is implemented with different subnetwork selection strategies, revealing superior performance to state-of-the-art continual learning methods tested on various datasets (CIFAR-100, CUB-200-2011, ImageNet-100 and ImageNet-1000). In particular, CP&S is capable of sequentially learning 10 tasks from ImageNet-1000 keeping an accuracy around 94% with negligible forgetting, a first-of-its-kind result in class-incremental learning. To the best of the authors' knowledge, this represents an improvement in accuracy above 10% when compared to the best alternative method.