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Marcelo Fiori

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Published work

7 published item(s)

preprint2026arXiv

A Unified Framework of Hyperbolic Graph Representation Learning Methods

Hyperbolic geometry has emerged as an effective latent space for representing complex networks, owing to its ability to capture hierarchical organization and heterogeneous connectivity patterns using low-dimensional embeddings. As a result, numerous hyperbolic graph representation learning methods have been proposed in recent years. However, their practical adoption and systematic comparison remain challenging, as implementations are fragmented and shared tools for reproducible and fair evaluation are lacking. In this work, we introduce a unified open-source framework for hyperbolic graph representation learning that integrates several widely used embedding methods under a common optimization interface. The novel framework enables consistent training, visualization, and evaluation of hyperbolic embeddings, and interfaces seamlessly with standard network analysis tools. Leveraging this unified setup, we conduct an experimental study of hyperbolic embedding methods on real-world networks, focusing on two canonical downstream tasks: link prediction and node classification. Beyond predictive accuracy, the study offers practical insights into the strengths and limitations of existing approaches, thereby facilitating informed method selection and fostering reproducible research in hyperbolic graph representation learning.

preprint2022arXiv

Online Change Point Detection for Weighted and Directed Random Dot Product Graphs

Given a sequence of random (directed and weighted) graphs, we address the problem of online monitoring and detection of changes in the underlying data distribution. Our idea is to endow sequential change-point detection (CPD) techniques with a graph representation learning substrate based on the versatile Random Dot Product Graph (RDPG) model. We consider efficient, online updates of a judicious monitoring function, which quantifies the discrepancy between the streaming graph observations and the nominal RDPG. This reference distribution is inferred via spectral embeddings of the first few graphs in the sequence. We characterize the distribution of this running statistic to select thresholds that guarantee error-rate control, and under simplifying approximations we offer insights on the algorithm's detection resolution and delay. The end result is a lightweight online CPD algorithm, that is also explainable by virtue of the well-appreciated interpretability of RDPG embeddings. This is in stark contrast with most existing graph CPD approaches, which either rely on extensive computation, or they store and process the entire observed time series. An apparent limitation of the RDPG model is its suitability for undirected and unweighted graphs only, a gap we aim to close here to broaden the scope of the CPD framework. Unlike previous proposals, our non-parametric RDPG model for weighted graphs does not require a priori specification of the weights' distribution to perform inference and estimation. This network modeling contribution is of independent interest beyond CPD. We offer an open-source implementation of the novel online CPD algorithm for weighted and direct graphs, whose effectiveness and efficiency are demonstrated via (reproducible) synthetic and real network data experiments.

preprint2015arXiv

Graph Matching: Relax at Your Own Risk

Graph matching---aligning a pair of graphs to minimize their edge disagreements---has received wide-spread attention from both theoretical and applied communities over the past several decades, including combinatorics, computer vision, and connectomics. Its attention can be partially attributed to its computational difficulty. Although many heuristics have previously been proposed in the literature to approximately solve graph matching, very few have any theoretical support for their performance. A common technique is to relax the discrete problem to a continuous problem, therefore enabling practitioners to bring gradient-descent-type algorithms to bear. We prove that an indefinite relaxation (when solved exactly) almost always discovers the optimal permutation, while a common convex relaxation almost always fails to discover the optimal permutation. These theoretical results suggest that initializing the indefinite algorithm with the convex optimum might yield improved practical performance. Indeed, experimental results illuminate and corroborate these theoretical findings, demonstrating that excellent results are achieved in both benchmark and real data problems by amalgamating the two approaches.

preprint2014arXiv

On spectral properties for graph matching and graph isomorphism problems

Problems related to graph matching and isomorphisms are very important both from a theoretical and practical perspective, with applications ranging from image and video analysis to biological and biomedical problems. The graph matching problem is challenging from a computational point of view, and therefore different relaxations are commonly used. Although common relaxations techniques tend to work well for matching perfectly isomorphic graphs, it is not yet fully understood under which conditions the relaxed problem is guaranteed to obtain the correct answer. In this paper we prove that the graph matching problem and its most common convex relaxation, where the matching domain of permutation matrices is substituted with its convex hull of doubly-stochastic matrices, are equivalent for a certain class of graphs, such equivalence being based on spectral properties of the corresponding adjacency matrices. We also derive results about the automorphism group of a graph, and provide fundamental spectral properties of the adjacency matrix.

preprint2013arXiv

A new framework for optimal classifier design

The use of alternative measures to evaluate classifier performance is gaining attention, specially for imbalanced problems. However, the use of these measures in the classifier design process is still unsolved. In this work we propose a classifier designed specifically to optimize one of these alternative measures, namely, the so-called F-measure. Nevertheless, the technique is general, and it can be used to optimize other evaluation measures. An algorithm to train the novel classifier is proposed, and the numerical scheme is tested with several databases, showing the optimality and robustness of the presented classifier.

preprint2013arXiv

Robust Multimodal Graph Matching: Sparse Coding Meets Graph Matching

Graph matching is a challenging problem with very important applications in a wide range of fields, from image and video analysis to biological and biomedical problems. We propose a robust graph matching algorithm inspired in sparsity-related techniques. We cast the problem, resembling group or collaborative sparsity formulations, as a non-smooth convex optimization problem that can be efficiently solved using augmented Lagrangian techniques. The method can deal with weighted or unweighted graphs, as well as multimodal data, where different graphs represent different types of data. The proposed approach is also naturally integrated with collaborative graph inference techniques, solving general network inference problems where the observed variables, possibly coming from different modalities, are not in correspondence. The algorithm is tested and compared with state-of-the-art graph matching techniques in both synthetic and real graphs. We also present results on multimodal graphs and applications to collaborative inference of brain connectivity from alignment-free functional magnetic resonance imaging (fMRI) data. The code is publicly available.

preprint2012arXiv

A Complete System for Candidate Polyps Detection in Virtual Colonoscopy

Computer tomographic colonography, combined with computer-aided detection, is a promising emerging technique for colonic polyp analysis. We present a complete pipeline for polyp detection, starting with a simple colon segmentation technique that enhances polyps, followed by an adaptive-scale candidate polyp delineation and classification based on new texture and geometric features that consider both the information in the candidate polyp location and its immediate surrounding area. The proposed system is tested with ground truth data, including flat and small polyps which are hard to detect even with optical colonoscopy. For polyps larger than 6mm in size we achieve 100% sensitivity with just 0.9 false positives per case, and for polyps larger than 3mm in size we achieve 93% sensitivity with 2.8 false positives per case.