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Jing Hao

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Artificial Intelligence Computer Vision Information Theory Machine Learning math.AP math.DG math.IT

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preprint2026arXiv

CoRe-Gen: Robust Spectrum-to-Structure Generation under Imperfect Fingerprint Conditions

Molecular structure elucidation from tandem mass spectra (MS/MS) remains challenging, particularly for de novo generation beyond database coverage. A common approach decomposes the task into spectrum-to-fingerprint prediction followed by fingerprint-to-structure decoding, enabling the use of large-scale molecular corpora. However, at deployment, the decoder relies on predicted rather than oracle fingerprints, introducing structured errors that propagate into generation. This results in a fundamental condition mismatch, where models trained on clean inputs must operate under noisy, biased predictions, especially for long-tail substructures. We present CoRe-Gen that explicitly addresses this gap. CoRe-Gen improves the intermediate condition via synthetic-spectrum pretraining of the encoder, matches deployment-time noise through frequency-aware fingerprint corruption during decoder training, and mitigates residual errors using structure-aware autoregressive decoding with compositional SELFIES representations, auxiliary structural supervision, and lightweight chemical constraints. Experiments on standard benchmarks show that CoRe-Gen establishes a new state of the art on NPLIB1, achieving 19.54\% Top-1 and 29.92\% Top-10 exact-match accuracy, while remaining competitive on the more challenging MassSpecGym benchmark. Importantly, CoRe-Gen preserves the efficiency advantages of autoregressive decoding, providing a practical and scalable solution for robust spectrum-to-structure generation under realistic conditions.

preprint2026arXiv

Unveiling and Bridging the Functional Perception Gap in MLLMs: Atomic Visual Alignment and Hierarchical Evaluation via PET-Bench

While Multimodal Large Language Models (MLLMs) have demonstrated remarkable proficiency in tasks such as abnormality detection and report generation for anatomical modalities, their capability in functional imaging remains largely unexplored. In this work, we identify and quantify a fundamental functional perception gap: the inability of current vision encoders to decode functional tracer biodistribution independent of morphological priors. Identifying Positron Emission Tomography (PET) as the quintessential modality to investigate this disconnect, we introduce PET-Bench, the first large-scale functional imaging benchmark comprising 52,308 hierarchical QA pairs from 9,732 multi-site, multi-tracer PET studies. Extensive evaluation of 19 state-of-the-art MLLMs reveals a critical safety hazard termed the Chain-of-Thought (CoT) hallucination trap. We observe that standard CoT prompting, widely considered to enhance reasoning, paradoxically decouples linguistic generation from visual evidence in PET, producing clinically fluent but factually ungrounded diagnoses. To resolve this, we propose Atomic Visual Alignment (AVA), a simple fine-tuning strategy that enforces the mastery of low-level functional perception prior to high-level diagnostic reasoning. Our results demonstrate that AVA effectively bridges the perception gap, transforming CoT from a source of hallucination into a robust inference tool and improving diagnostic accuracy by up to 14.83%. Code and data are available at https://github.com/yezanting/PET-Bench.

preprint2022arXiv

Entire solutions of the generalized Hessian inequality

In this paper, we discuss the more general Hessian inequality $σ_{k}^{\frac{1}{k}}(λ(D_i (A\left(|Du|\right) D_j u)))\geq f(u)$ including the Laplacian, p-Laplacian, mean curvature, Hessian, k-mean curvature operators, and provide a necessary and sufficient condition on the global solvability, which can be regarded as generalized Keller-Osserman conditions.

preprint2020arXiv

Distribution of the minimal distance of random linear codes

In this paper, we study the distribution of the minimal distance (in the Hamming metric) of a random linear code of dimension $k$ in $\mathbb{F}_q^n$ . We provide quantitative estimates showing that the distribution function of the minimal distance is close ({\it{}superpolynomially} in $n$ )to the cumulative distribution function of the minimum of $(q^k-1)/(q-1)$ independent binomial random variables with parameters $\frac{1}{q}$ and $n$ . The latter, in turn, converges to a Gumbel distribution at integer points when $\frac{k}{n}$ converges to a fixed number in $(0,1)$ . Our result confirms in a strong sense that apart from identification of the weights of proportional codewords, the probabilistic dependencies introduced by the linear structure of the random code, produce a negligible effect on the minimal code weight. As a corollary of the main result, we obtain an improvement of the Gilbert--Varshamov bound for $2<q<49$ .

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