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Jes Frellsen

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Published work

13 published item(s)

preprint2026arXiv

Mix, Don't Tune: Bilingual Pre-Training Outperforms Hyperparameter Search in Data-Constrained Settings

For most languages of the world, language model pre-training operates in a data-constrained regime where models must repeat their training data many times, degrading generalization. Two remedies exist: aggressive hyperparameter tuning such as high weight decay, and mixing in data from a high-resource auxiliary language to directly aid the low-resource target. While hyperparameter tuning regularizes the model by shrinking weights to restrict network capacity, auxiliary data mixing uses a tunable mixing ratio to expand the training distribution and diversify the training signal with new knowledge. Both offer a principled way to improve training in a data-constrained domain. We compare these levers systematically across four model scales from 150M to 1.43B parameters, using Arabic as the low-resource target and English as the auxiliary, over approximately 1000 pre-training runs. Three findings emerge. First, mixing yields larger improvements than hyperparameter tuning on both validation loss and downstream task accuracy, and the gap grows with model size. Second, we quantify how much mixing helps: it boosts performance by an amount equivalent to 2--3$\times$ the unique target data on validation loss and 2--13$\times$ on downstream task accuracy, with the gain scaling steeply with model size. Third, this divergence reveals that target-language validation loss systematically underestimates mixing's value. Mixing regularizes by diversifying the training signal and contributes knowledge the repeated target corpus cannot supply; validation loss captures only the first effect. Our practical recommendations are: mix in a high-resource language, prioritize the mixing ratio over hyperparameter tuning, and transfer hyperparameters from a small proxy model via $μ$P.

preprint2026arXiv

Order-Agnostic Autoregressive Modelling with Missing Data

Order-Agnostic autoregressive models have demonstrated strong performance in deep generative modeling, yet their use in settings with incomplete data remains largely unexplored. In this work, we reinterpret them through the lens of missing data. First, we show that their standard training procedure on fully observed data implicitly performs imputation under a missing completely at random mechanism, resulting in robust out-of-sample imputation performance in settings with high missingness. Second, we introduce the first principled framework for training them directly on incomplete datasets under general missingness mechanisms. Third, we leverage their amortized conditional density estimation to perform active information acquisition, i.e., sequentially selecting the most informative missing variables for downstream prediction or inference. Across a suite of real-world benchmarks, our Missingness-Aware Order-Agnostic Autoregressive Model (MO-ARM) consistently outperforms established imputation baselines.

preprint2026arXiv

Position: agentic AI orchestration should be Bayes-consistent

LLMs excel at predictive tasks and complex reasoning tasks, but many high-value deployments rely on decisions under uncertainty, for example, which tool to call, which expert to consult, or how many resources to invest. While the usefulness and feasibility of Bayesian approaches remain unclear for LLM inference, this position paper argues that the control layer of an agentic AI system (that orchestrates LLMs and tools) is a clear case where Bayesian principles should shine. Bayesian decision theory provides a framework for agentic systems that can help to maintain beliefs over task-relevant latent quantities, to update these beliefs from observed agentic and human-AI interactions, and to choose actions. Making LLMs themselves explicitly Bayesian belief-updating engines remains computationally intensive and conceptually nontrivial as a general modeling target. In contrast, this paper argues that coherent decision-making requires Bayesian principles at the orchestration level of the agentic system, not necessarily the LLM agent parameters. This paper articulates practical properties for Bayesian control that fit modern agentic AI systems and human-AI collaboration, and provides concrete examples and design patterns to illustrate how calibrated beliefs and utility-aware policies can improve agentic AI orchestration.

preprint2026arXiv

The magnetic scalar potential for a rectangular prism

We analytically solve Poisson's equation for the magnetic scalar potential generated by a uniformly magnetized rectangular prism and determine a closed-form solution for the magnetic scalar potential given only in terms of arctan and natural logarithmic functions. We show that the magnetic scalar potential can be written as a demagnetization vector, containing all the geometric information, multiplied with the magnetization, analogous to demagnetization tensors. We validate the derived analytical expression for the magnetic scalar potential by comparing with a finite element simulation and show that these agree perfectly. We finally extend the concept of the demagnetization vector and tensor, which contains the geometric information for the source generating the potential, to gravitational objects.

preprint2026arXiv

Tracing Uncertainty in Language Model "Reasoning"

Language model (LM) "reasoning", commonly described as Chain-of-Thought or test-time scaling, often improves benchmark performance, but the dynamics underlying this process remain poorly understood. We study these dynamics through the lens of uncertainty quantification by treating the "reasoning" traces, the intermediate token sequences generated by LMs, as evolving model states. We summarize each trace by an uncertainty trace profile: a small set of features describing the shape of the uncertainty signal over its trace, such as its slope and linearity. We find that across five LMs evaluated on GSM8K and ProntoQA, these profiles predict whether a trace yields a correct final answer with AUROC up to 0.807, improving markedly on recent related work. We reach AUROC 0.801 using only the first few hundred tokens of full traces, suggesting that errors can be detected early in the generation. A detailed comparison of correct and incorrect traces further reveals qualitatively distinct uncertainty profiles, with correct traces showing a steeper and less linear decline in uncertainty. Together, the results suggest that our method, grounded in decision-making under uncertainty, provides a principled lens for studying the generative process underlying LM "reasoning".

preprint2023arXiv

Explainability as statistical inference

A wide variety of model explanation approaches have been proposed in recent years, all guided by very different rationales and heuristics. In this paper, we take a new route and cast interpretability as a statistical inference problem. We propose a general deep probabilistic model designed to produce interpretable predictions. The model parameters can be learned via maximum likelihood, and the method can be adapted to any predictor network architecture and any type of prediction problem. Our method is a case of amortized interpretability models, where a neural network is used as a selector to allow for fast interpretation at inference time. Several popular interpretability methods are shown to be particular cases of regularised maximum likelihood for our general model. We propose new datasets with ground truth selection which allow for the evaluation of the features importance map. Using these datasets, we show experimentally that using multiple imputation provides more reasonable interpretations.

preprint2022arXiv

Benchmarking Generative Latent Variable Models for Speech

Stochastic latent variable models (LVMs) achieve state-of-the-art performance on natural image generation but are still inferior to deterministic models on speech. In this paper, we develop a speech benchmark of popular temporal LVMs and compare them against state-of-the-art deterministic models. We report the likelihood, which is a much used metric in the image domain, but rarely, or incomparably, reported for speech models. To assess the quality of the learned representations, we also compare their usefulness for phoneme recognition. Finally, we adapt the Clockwork VAE, a state-of-the-art temporal LVM for video generation, to the speech domain. Despite being autoregressive only in latent space, we find that the Clockwork VAE can outperform previous LVMs and reduce the gap to deterministic models by using a hierarchy of latent variables.

preprint2022arXiv

deep-significance - Easy and Meaningful Statistical Significance Testing in the Age of Neural Networks

A lot of Machine Learning (ML) and Deep Learning (DL) research is of an empirical nature. Nevertheless, statistical significance testing (SST) is still not widely used. This endangers true progress, as seeming improvements over a baseline might be statistical flukes, leading follow-up research astray while wasting human and computational resources. Here, we provide an easy-to-use package containing different significance tests and utility functions specifically tailored towards research needs and usability.

preprint2022arXiv

Hierarchical VAEs Know What They Don't Know

Deep generative models have been demonstrated as state-of-the-art density estimators. Yet, recent work has found that they often assign a higher likelihood to data from outside the training distribution. This seemingly paradoxical behavior has caused concerns over the quality of the attained density estimates. In the context of hierarchical variational autoencoders, we provide evidence to explain this behavior by out-of-distribution data having in-distribution low-level features. We argue that this is both expected and desirable behavior. With this insight in hand, we develop a fast, scalable and fully unsupervised likelihood-ratio score for OOD detection that requires data to be in-distribution across all feature-levels. We benchmark the method on a vast set of data and model combinations and achieve state-of-the-art results on out-of-distribution detection.

preprint2022arXiv

Model-agnostic out-of-distribution detection using combined statistical tests

We present simple methods for out-of-distribution detection using a trained generative model. These techniques, based on classical statistical tests, are model-agnostic in the sense that they can be applied to any differentiable generative model. The idea is to combine a classical parametric test (Rao's score test) with the recently introduced typicality test. These two test statistics are both theoretically well-founded and exploit different sources of information based on the likelihood for the typicality test and its gradient for the score test. We show that combining them using Fisher's method overall leads to a more accurate out-of-distribution test. We also discuss the benefits of casting out-of-distribution detection as a statistical testing problem, noting in particular that false positive rate control can be valuable for practical out-of-distribution detection. Despite their simplicity and generality, these methods can be competitive with model-specific out-of-distribution detection algorithms without any assumptions on the out-distribution.

preprint2022arXiv

Uphill Roads to Variational Tightness: Monotonicity and Monte Carlo Objectives

We revisit the theory of importance weighted variational inference (IWVI), a promising strategy for learning latent variable models. IWVI uses new variational bounds, known as Monte Carlo objectives (MCOs), obtained by replacing intractable integrals by Monte Carlo estimates -- usually simply obtained via importance sampling. Burda, Grosse and Salakhutdinov (2016) showed that increasing the number of importance samples provably tightens the gap between the bound and the likelihood. Inspired by this simple monotonicity theorem, we present a series of nonasymptotic results that link properties of Monte Carlo estimates to tightness of MCOs. We challenge the rationale that smaller Monte Carlo variance leads to better bounds. We confirm theoretically the empirical findings of several recent papers by showing that, in a precise sense, negative correlation reduces the variational gap. We also generalise the original monotonicity theorem by considering non-uniform weights. We discuss several practical consequences of our theoretical results. Our work borrows many ideas and results from the theory of stochastic orders.

preprint2016arXiv

Fast Bayesian Non-Negative Matrix Factorisation and Tri-Factorisation

We present a fast variational Bayesian algorithm for performing non-negative matrix factorisation and tri-factorisation. We show that our approach achieves faster convergence per iteration and timestep (wall-clock) than Gibbs sampling and non-probabilistic approaches, and do not require additional samples to estimate the posterior. We show that in particular for matrix tri-factorisation convergence is difficult, but our variational Bayesian approach offers a fast solution, allowing the tri-factorisation approach to be used more effectively.

preprint2010arXiv

Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized

Understanding protein structure is of crucial importance in science, medicine and biotechnology. For about two decades, knowledge based potentials based on pairwise distances -- so-called "potentials of mean force" (PMFs) -- have been center stage in the prediction and design of protein structure and the simulation of protein folding. However, the validity, scope and limitations of these potentials are still vigorously debated and disputed, and the optimal choice of the reference state -- a necessary component of these potentials -- is an unsolved problem. PMFs are loosely justified by analogy to the reversible work theorem in statistical physics, or by a statistical argument based on a likelihood function. Both justifications are insightful but leave many questions unanswered. Here, we show for the first time that PMFs can be seen as approximations to quantities that do have a rigorous probabilistic justification: they naturally arise when probability distributions over different features of proteins need to be combined. We call these quantities reference ratio distributions deriving from the application of the reference ratio method. This new view is not only of theoretical relevance, but leads to many insights that are of direct practical use: the reference state is uniquely defined and does not require external physical insights; the approach can be generalized beyond pairwise distances to arbitrary features of protein structure; and it becomes clear for which purposes the use of these quantities is justified. We illustrate these insights with two applications, involving the radius of gyration and hydrogen bonding. In the latter case, we also show how the reference ratio method can be iteratively applied to sculpt an energy funnel. Our results considerably increase the understanding and scope of energy functions derived from known biomolecular structures.