Researcher profile

Jaejun Lee

Jaejun Lee contributes to research discovery and scholarly infrastructure.

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Published work

4 published item(s)

preprint2026arXiv

From Knowledge to Action: Outcomes of the 2025 Large Language Model (LLM) Hackathon for Applications in Materials Science and Chemistry

Large language models (LLMs) are rapidly changing how researchers in materials science and chemistry discover, organize, and act on scientific knowledge. This paper analyzes a broad set of community-developed LLM applications in an effort to identify emerging patterns in how these systems can be used across the scientific research lifecycle. We organize the projects into two complementary categories: Knowledge Infrastructure, systems that structure, retrieve, synthesize, and validate scientific information; and Action Systems, systems that execute, coordinate, or automate scientific work across computational and experimental environments. The submissions reveal a shift from single-purpose LLM tools toward integrated, multi-agent workflows that combine retrieval, reasoning, tool use, and domain-specific validation. Prominent themes include retrieval-augmented generation as grounding infrastructure, persistent structured knowledge representations, multimodal and multilingual scientific inputs, and early progress toward laboratory-integrated closed-loop systems. Together, these results suggest that LLMs are evolving from general-purpose assistants into composable infrastructure for scientific reasoning and action. This work provides a community snapshot of that transition and a practical taxonomy for understanding emerging LLM-enabled workflows in materials science and chemistry.

preprint2020arXiv

DeeBERT: Dynamic Early Exiting for Accelerating BERT Inference

Large-scale pre-trained language models such as BERT have brought significant improvements to NLP applications. However, they are also notorious for being slow in inference, which makes them difficult to deploy in real-time applications. We propose a simple but effective method, DeeBERT, to accelerate BERT inference. Our approach allows samples to exit earlier without passing through the entire model. Experiments show that DeeBERT is able to save up to ~40% inference time with minimal degradation in model quality. Further analyses show different behaviors in the BERT transformer layers and also reveal their redundancy. Our work provides new ideas to efficiently apply deep transformer-based models to downstream tasks. Code is available at https://github.com/castorini/DeeBERT.

preprint2020arXiv

Howl: A Deployed, Open-Source Wake Word Detection System

We describe Howl, an open-source wake word detection toolkit with native support for open speech datasets, like Mozilla Common Voice and Google Speech Commands. We report benchmark results on Speech Commands and our own freely available wake word detection dataset, built from MCV. We operationalize our system for Firefox Voice, a plugin enabling speech interactivity for the Firefox web browser. Howl represents, to the best of our knowledge, the first fully productionized yet open-source wake word detection toolkit with a web browser deployment target. Our codebase is at https://github.com/castorini/howl.

preprint2020arXiv

Showing Your Work Doesn't Always Work

In natural language processing, a recently popular line of work explores how to best report the experimental results of neural networks. One exemplar publication, titled "Show Your Work: Improved Reporting of Experimental Results," advocates for reporting the expected validation effectiveness of the best-tuned model, with respect to the computational budget. In the present work, we critically examine this paper. As far as statistical generalizability is concerned, we find unspoken pitfalls and caveats with this approach. We analytically show that their estimator is biased and uses error-prone assumptions. We find that the estimator favors negative errors and yields poor bootstrapped confidence intervals. We derive an unbiased alternative and bolster our claims with empirical evidence from statistical simulation. Our codebase is at http://github.com/castorini/meanmax.