Researcher profile

Huziel E. Sauceda

Huziel E. Sauceda contributes to research discovery and scholarly infrastructure.

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Published work

5 published item(s)

preprint2026arXiv

Towards Accelerated SCF Workflows with Equivariant Density-Matrix Learning and Analytic Refinement

We present \textsc{dm-PhiSNet}, a physically constrained \textsc{PhiSNet}-based equivariant model that predicts one-electron reduced density matrices (1-RDMs) directly from molecular geometries in an atomic-orbital (AO) basis for accelerated self-consistent field (SCF) workflows. Training follows a two-stage schedule with progressively introduced physically motivated objectives, and the resulting predictions are refined by a lightweight analytic block. This block enforces electron-number conservation, drives the 1-RDM toward generalized idempotency in the AO metric, and regularizes the occupation spectrum of the Löwdin-orthogonalized density. Across six closed-shell systems -- H$_2$O, CH$_4$, NH$_3$, HF, ethanol, and NO$_3^-$ -- the refined 1-RDMs provide SCF initial guesses that substantially reduce iteration steps by 49--81\% relative to standard initializations. Beyond SCF acceleration, the learned 1-RDMs yield accurate one-shot total energies and Hellmann--Feynman atomic forces without force supervision, indicating that the model captures chemically meaningful electronic structure. These results demonstrate that combining equivariant learning with analytic constraint enforcement provides a simple, general route to solver-ready density-matrix initializations and accelerated SCF workflows.

preprint2022arXiv

Super-resolution in Molecular Dynamics Trajectory Reconstruction with Bi-Directional Neural Networks

Molecular dynamics simulations are a cornerstone in science, allowing to investigate from the system's thermodynamics to analyse intricate molecular interactions. In general, to create extended molecular trajectories can be a computationally expensive process, for example, when running $ab-initio$ simulations. Hence, repeating such calculations to either obtain more accurate thermodynamics or to get a higher resolution in the dynamics generated by a fine-grained quantum interaction can be time- and computationally-consuming. In this work, we explore different machine learning (ML) methodologies to increase the resolution of molecular dynamics trajectories on-demand within a post-processing step. As a proof of concept, we analyse the performance of bi-directional neural networks such as neural ODEs, Hamiltonian networks, recurrent neural networks and LSTMs, as well as the uni-directional variants as a reference, for molecular dynamics simulations (here: the MD17 dataset). We have found that Bi-LSTMs are the best performing models; by utilizing the local time-symmetry of thermostated trajectories they can even learn long-range correlations and display high robustness to noisy dynamics across molecular complexity. Our models can reach accuracies of up to 10$^{-4}$ angstroms in trajectory interpolation, while faithfully reconstructing several full cycles of unseen intricate high-frequency molecular vibrations, rendering the comparison between the learned and reference trajectories indistinguishable. The results reported in this work can serve (1) as a baseline for larger systems, as well as (2) for the construction of better MD integrators.

preprint2021arXiv

BIGDML: Towards Exact Machine Learning Force Fields for Materials

Machine-learning force fields (MLFF) should be accurate, computationally and data efficient, and applicable to molecules, materials, and interfaces thereof. Currently, MLFFs often introduce tradeoffs that restrict their practical applicability to small subsets of chemical space or require exhaustive datasets for training. Here, we introduce the Bravais-Inspired Gradient-Domain Machine Learning (BIGDML) approach and demonstrate its ability to construct reliable force fields using a training set with just 10-200 geometries for materials including pristine and defect-containing 2D and 3D semiconductors and metals, as well as chemisorbed and physisorbed atomic and molecular adsorbates on surfaces. The BIGDML model employs the full relevant symmetry group for a given material, does not assume artificial atom types or localization of atomic interactions and exhibits high data efficiency and state-of-the-art energy accuracies (errors substantially below 1 meV per atom) for an extended set of materials. Extensive path-integral molecular dynamics carried out with BIGDML models demonstrate the counterintuitive localization of benzene--graphene dynamics induced by nuclear quantum effects and allow to rationalize the Arrhenius behavior of hydrogen diffusion coefficient in a Pd crystal for a wide range of temperatures.

preprint2021arXiv

On the forbidden graphene's ZO (out-of-plane optic) phononic band-analog vibrational modes in fullerenes

The study of nanostructures' vibrational properties is at the core of nanoscience research, they are known to represent a fingerprint of the system as well as to hint the underlying nature of chemical bonds. In this work we focus on addressing how does the vibrational density of states (VDOS) of the carbon fullerene family ($C_n:~n=20\to720$ atoms) evolves from the molecular to the bulk material (graphene) behavior using density functional theory. We found that the fullerene's VDOS smoothly converges to the graphene characteristic shape-line with the only noticeable discrepancy in the frequency range of the out-of-plane optic (ZO) phonon band in graphene. From a comparison of both systems we obtain as main results that: 1)The pentagonal faces in the fullerenes impede the existence of the analog of the high frequency graphene's ZO phonons, 2)which in the context of phonons this could be interpreted as a compression (by 43\%) of the ZO phonon band by decreasing its maximum allowed radial-optic vibration frequency. 3)As a result, the deviation of fullerene's VDOS relative to graphene should result on important thermodynamical implications. The obtained insights can be extrapolated to other structures containing pentagonal rings such as nanostructure or as pentagonal defects in graphene.

preprint2021arXiv

SpookyNet: Learning Force Fields with Electronic Degrees of Freedom and Nonlocal Effects

Machine-learned force fields (ML-FFs) combine the accuracy of ab initio methods with the efficiency of conventional force fields. However, current ML-FFs typically ignore electronic degrees of freedom, such as the total charge or spin state, and assume chemical locality, which is problematic when molecules have inconsistent electronic states, or when nonlocal effects play a significant role. This work introduces SpookyNet, a deep neural network for constructing ML-FFs with explicit treatment of electronic degrees of freedom and quantum nonlocality. Chemically meaningful inductive biases and analytical corrections built into the network architecture allow it to properly model physical limits. SpookyNet improves upon the current state-of-the-art (or achieves similar performance) on popular quantum chemistry data sets. Notably, it is able to generalize across chemical and conformational space and can leverage the learned chemical insights, e.g. by predicting unknown spin states, thus helping to close a further important remaining gap for today's machine learning models in quantum chemistry.