Researcher profile

Deok-Sun Lee

Deok-Sun Lee contributes to research discovery and scholarly infrastructure.

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Published work

6 published item(s)

preprint2026arXiv

Watch your neighbors: Training statistically accurate chaotic systems with local phase space information

Chaotic systems pose fundamental challenges for data-driven dynamics discovery, as small modeling errors lead to exponentially growing trajectory discrepancies. Since exact long-term prediction is unattainable, it is natural to ask what a good surrogate model for chaotic dynamics is. Prior work has largely focused either on reproducing the Jacobian of the underlying dynamics, which governs local expansion and contraction rates, or on training surrogate models that reproduce the ground-truth dynamics' long-term statistical behavior. In this work, we propose a new framework that aims to bridge these two paradigms by training surrogate dynamics models with accurate Jacobians and long-term statistical properties. Our method constructs a local covering of a chaotic attractor in phase space and analyzes the expansion and contraction of these coverings under the dynamics. The surrogate model is trained by minimizing the maximum mean discrepancy between the pushforward distributions of the coverings under the surrogate and ground-truth dynamics. Experiments show that our method significantly improves Jacobian accuracy while remaining competitive with state-of-the-art statistically accurate dynamics learning methods. Our code is fully available at https://anonymous.4open.science/r/neighborwatch.

preprint2024arXiv

Correlation-enhanced viable core in metabolic networks

Cellular ingredient concentrations can be stabilized by adjusting generation and consumption rates through multiple pathways. To explore the portion of cellular metabolism equipped with multiple pathways, we categorize individual metabolic reactions and compounds as viable or inviable: A compound is viable if processed by two or more reactions, and a reaction is viable if all of its substrates and products are viable. Using this classification, we identify the maximal subnetwork of viable nodes, referred to as the {\it viable core}, in bipartite metabolic networks across thousands of species. The obtained viable cores are remarkably larger than those in degree-preserving randomized networks, while their broad degree distributions commonly enable the viable cores to shrink gradually as reaction nodes are deleted. We demonstrate that the positive degree-degree correlations of the empirical networks may underlie the enlarged viable cores compared to the randomized networks. By investigating the relation between degree and cross-species frequency of metabolic compounds and reactions, we elucidate the evolutionary origin of the correlations.

preprint2024arXiv

Heterogeneous popularity of metabolic reactions from evolution

The composition of cellular metabolism is different across species. Empirical data reveal that bacterial species contain similar numbers of metabolic reactions but that the cross-species popularity of reactions is so heterogenous that some reactions are found in all the species while others are in just few species, characterized by a power-law distribution with the exponent one. Introducing an evolutionary model concretizing the stochastic recruitment of chemical reactions into the metabolism of different species at different times and their inheritance to descendants, we demonstrate that the exponential growth of the number of species containing a reaction and the saturated recruitment rate of brand-new reactions lead to the empirically identified power-law popularity distribution. Furthermore, the structural characteristics of metabolic networks and the species' phylogeny in our simulations agree well with empirical observations.

preprint2024arXiv

Scaling in local to global condensation of wealth on sparse networks

The prevalence of wealth inequality propels us to characterize its origin and progression, via empirical and theoretical studies. The Yard-Sale(YS) model, in which a portion of the smaller wealth is transferred between two individuals, culminates in the concentration of almost all wealth to a single individual, while distributing rest of the wealth with a power-law of exponent one. By incorporating redistribution to the model, in which the transferred wealth is proportional to the sender's wealth, we show that such extreme inequality is suppressed if the frequency ratio of redistribution to the YS-type exchange exceeds the inverse of the population size. Studying our model on a sparsely-connected population, we find that the wealth inequality ceases to grow for a period, when local rich nodes can no longer acquire wealth from their broke nearest neighbors. Subsequently, inequality resumes growth due to the redistribution effect by allowing locally amassed wealth to move and coalesce. Analyzing the Langevin equations and the coalescing random walk on complex networks, we elucidate the scaling behaviors of wealth inequality in those multiple phases. These findings reveal the influence of network structure on wealth distribution, offering a novel perspective on wealth inequality.

preprint2022arXiv

Stability and selective extinction in complex mutualistic networks

We study species abundance in the empirical plant-pollinator mutualistic networks exhibiting broad degree distributions, with uniform intra-group competition assumed, by the Lotka-Volterra equation. The stability of a fixed point is found to be identified by the signs of its non-zero components and those of its neighboring fixed points. Taking the annealed approximation, we derive the non-zero components to be formulated in terms of degrees and the rescaled interaction strengths, which lead us to find different stable fixed points depending on parameters, and we obtain the phase diagram. The selective extinction phase finds small-degree species extinct and effective interaction reduced, maintaining stability and hindering the onset of instability. The non-zero minimum species abundances from different empirical networks show data collapse when rescaled as predicted theoretically.

preprint2020arXiv

Optimizing hospital distribution across districts for reducing tuberculosis fatalities

The spatial distributions of diverse facilities are often understood in terms of the optimization of the commute distance or the economic profit. Incorporating more general objective functions into such optimization framework may be useful, helping the policy decisions to meet various social and economic demands. As an example, we consider how hospitals should be distributed to minimize the total fatalities of tuberculosis (TB). The empirical data of Korea shows that the fatality rate of TB in a district decreases with the areal density of hospitals, implying their correlation and the possibility of reducing the nationwide fatalities by adjusting the hospital distribution across districts. Approximating the fatality rate by the probability of a patient not to visit a hospital in her/his residential district for the duration period of TB and evaluating the latter probability in the random-walk framework, we obtain the fatality rate as an exponential function of the hospital density with a characteristic constant related to each district's effective lattice constant estimable empirically. This leads us to the optimal hospital distribution which finds the hospital density in a district to be a logarithmic function of the rescaled patient density. The total fatalities is reduced by 13\% with this optimum. The current hospital density deviates from the optimized one in different manners from district to district, which is analyzed in the proposed model framework. The assumptions and limitations of our study are also discussed.