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Researcher profile

Chengyu Liu

Chengyu Liu contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Machine Learningeess.ASeess.SPQuantitative MethodsSound

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Published work

3 published item(s)

preprint2026arXiv

PEACE: Cross-modal Enhanced Pediatric-Adult ECG Alignment for Robust Pediatric Diagnosis

Automated pediatric electrocardiogram (ECG) diagnosis remains challenging because models trained predominantly on adult data suffer from substantial cross-population mismatch, while pediatric labels are often scarce. We present PEACE (Pediatric-Adult ECG Alignment via Cross-modal Enhancement), a structured cross-modal alignment framework for adult-to-pediatric ECG transfer. PEACE integrates tri-axial clinical semantic decomposition, label-query feature extraction, and curriculum-gated optimization to align transferable adult ECG representations with pediatric diagnostic targets. Since ZZU-pECG provides no paired clinical reports, we generate label-conditioned semantic descriptors using Gemini with concise clinical prompts and use them only as auxiliary training supervision; inference remains ECG-only. On ZZU-pECG, PEACE achieves 59.39%, 79.03%, and 90.89% AUC under zero-shot, 50-shot, and full fine-tuning settings, respectively, and reaches 96.65% AUC on the shared PTB-XL label space. These results suggest that structured clinical semantic supervision can improve low-resource adult-to-pediatric ECG transfer, while prospective clinical validation and more explicit age-aware modeling remain necessary before real-world deployment.

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preprint2022arXiv

Neural network facilitated ab initio derivation of linear formula: A case study on formulating the relationship between DNA motifs and gene expression

Developing models with high interpretability and even deriving formulas to quantify relationships between biological data is an emerging need. We propose here a framework for ab initio derivation of sequence motifs and linear formula using a new approach based on the interpretable neural network model called contextual regression model. We showed that this linear model could predict gene expression levels using promoter sequences with a performance comparable to deep neural network models. We uncovered a list of 300 motifs with important regulatory roles on gene expression and showed that they also had significant contributions to cell-type specific gene expression in 154 diverse cell types. This work illustrates the possibility of deriving formulas to represent biology laws that may not be easily elucidated. (https://github.com/Wang-lab-UCSD/Motif_Finding_Contextual_Regression)

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preprint2020arXiv

Temporal-Framing Adaptive Network for Heart Sound Segmentation without Prior Knowledge of State Duration

Objective: This paper presents a novel heart sound segmentation algorithm based on Temporal-Framing Adaptive Network (TFAN), including state transition loss and dynamic inference for decoding the most likely state sequence. Methods: In contrast to previous state-of-the-art approaches, the TFAN-based method does not require any knowledge of the state duration of heart sounds and is therefore likely to generalize to non sinus rhythm. The TFAN-based method was trained on 50 recordings randomly chosen from Training set A of the 2016 PhysioNet/Computer in Cardiology Challenge and tested on the other 12 independent training and test databases (2099 recordings and 52180 beats). The databases for segmentation were separated into three levels of increasing difficulty (LEVEL-I, -II and -III) for performance reporting. Results: The TFAN-based method achieved a superior F1 score for all 12 databases except for `Test-B', with an average of 96.7%, compared to 94.6% for the state-of-the-art method. Moreover, the TFAN-based method achieved an overall F1 score of 99.2%, 94.4%, 91.4% on LEVEL-I, -II and -III data respectively, compared to 98.4%, 88.54% and 79.80% for the current state-of-the-art method. Conclusion: The TFAN-based method therefore provides a substantial improvement, particularly for more difficult cases, and on data sets not represented in the public training data. Significance: The proposed method is highly flexible and likely to apply to other non-stationary time series. Further work is required to understand to what extent this approach will provide improved diagnostic performance, although it is logical to assume superior segmentation will lead to improved diagnostics.

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