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Chen Li

Chen Li contributes to research discovery and scholarly infrastructure.

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Published work

3 published item(s)

preprint2026arXiv

Thinking in Scales: Accelerating Gigapixel Pathology Image Analysis via Adaptive Continuous Reasoning

Traditional whole slide image (WSI) analysis methods typically rely on the multiple instance learning (MIL) paradigm, which extracts patch-level features at high magnification and aggregates them for slide-level prediction. However, such exhaustive patch-level processing is computationally expensive, severely limiting the efficiency and scalability of WSI analysis. To address this challenge, we propose PathCTM (a Pathology-oriented Continuous Thought Model) that enables token-efficient scale-space continuous reasoning for gigapixel WSIs. PathCTM formulates diagnostic inference as a dynamic sequential information pursuit. It progressively transitions from low-magnification global to high-magnification local inspection, and adaptively terminates inference when sufficient evidence is gathered to effectively bound decision uncertainty. Specifically, it uses conditional computation for dynamic scale switching with attention-guided region pruning, coupled with confidence-aware early stopping. Extensive experiments demonstrate that, compared with standard MIL-based methods, PathCTM reduces the number of required image patches by 95.95% and shortens inference time by approximately 95.62%, while maintaining AUC without degradation. Code is available at https://github.com/JSGe-AI/PathCTM.

preprint2025arXiv

Warm absorber outflows in radio-loud active galactic nucleus 3C~59

Both jets and ionized outflows in active galactic nuclei (AGNs) are thought to play important roles in affecting the star formation and evolution of host galaxies, but their relationship is still unclear. As a pilot study, we performed a detailed spectral analysis for a radio-loud (RL) AGN 3C~59 ($z=0.1096$) by systematically considering various factors that may affect the fitting results, and thereby establishing a general spectral fitting strategy for subsequent research with larger sample. 3C~59 is one rare target for simultaneously studying jets and warm absorbers (WAs) that is one type of ionized outflows. Based on the multi-wavelength data from near-infrared (NIR) to hard X-ray bands detected by DESI, GALEX, and XMM-Newton, we used SPEX code to build broadband continuum models and perform photoionization modeling with PION code to constrain the physical parameters of WAs in 3C~59. We found two WAs with ionization parameter of $\log [ξ/(\rm{erg\ cm\ s}^{-1})] = 2.65^{+0.10}_{-0.09}$ and $1.65\pm 0.11$, respectively, and their outflowing velocities are $v_{\rm out} = -528^{+163}_{-222}\ \rm{km\ s}^{-1}$ and $-228^{+121}_{-122}\ \rm{km\ s}^{-1}$, respectively. These WAs are located between outer torus and narrow (emission-)line region, and their positive $v_{\rm out}$-$ξ$ relation can be explained by the radiation-pressure-driven mechanism. We found that the estimations of these physical properties are affected by the different spectral fitting strategies, such as the inclusion of NIR to ultra-violet data, the choice of energy range of spectrum, or the composition of the spectral energy distribution. Based on the same fitting strategy, this work presents a comparative study of outflow driven mechanism between a RL AGN (3C 59) and a radio-quiet AGN (NGC 3227), which suggests a similar driven mechanism of their WA outflows and a negligible role of jets in this process.

preprint2024arXiv

SUANPAN: Scalable Photonic Linear Vector Machine

Photonic linear operation is a promising approach to handle the extensive vector multiplications in artificial intelligence techniques due to the natural bosonic parallelism and high-speed information transmission of photonics. Although it is believed that maximizing the interaction of the light beams is necessary to fully utilize the parallelism and tremendous efforts have been made in past decades, the achieved dimensionality of vector-matrix multiplication is very limited due to the difficulty of scaling up a tightly interconnected or highly coupled optical system. Additionally, there is still a lack of a universal photonic computing architecture that can be readily merged with existing computing system to meet the computing power demand of AI techniques. Here, we propose a programmable and reconfigurable photonic linear vector machine to perform only the inner product of two vectors, formed by a series of independent basic computing units, while each unit is just one pair of light-emitter and photodetector. Since there is no interaction among light beams inside, extreme scalability could be achieved by simply duplicating the independent basic computing unit while there is no requirement of large-scale analog-to-digital converter and digital-to-analog converter arrays. Our architecture is inspired by the traditional Chinese Suanpan or abacus and thus is denoted as photonic SUANPAN. As a proof of principle, SUANPAN architecture is implemented with an 8*8 vertical cavity surface emission laser array and an 8*8 MoTe2 two-dimensional material photodetector array. We believe that our proposed photonic SUANPAN is capable of serving as a fundamental linear vector machine that can be readily merged with existing electronic digital computing system and is potential to enhance the computing power for future various AI applications.