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Researcher profile

Anuj Karpatne

Anuj Karpatne contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Machine LearningComputer VisionArtificial IntelligenceComputational Engineering, Finance, and Scienceeess.SPmath.NANumerical AnalysisSocial and Information Networks

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Published work

8 published item(s)

preprint2026arXiv

A continental-scale dataset of ground beetles with high-resolution images and validated morphological trait measurements

Despite the ecological significance of invertebrates, global trait databases remain heavily biased toward vertebrates and plants, limiting comprehensive ecological analyses of high-diversity groups like ground beetles. Ground beetles (Coleoptera: Carabidae) serve as critical bioindicators of ecosystem health, providing valuable insights into biodiversity shifts driven by environmental changes. While the National Ecological Observatory Network (NEON) maintains an extensive collection of carabid specimens from across the United States, these primarily exist as physical collections, restricting widespread research access and large-scale analysis. To address these gaps, we present a multimodal dataset digitizing over 13,200 NEON carabids from 30 sites spanning the continental US and Hawaii through high-resolution imaging, enabling broader access and computational analysis. The dataset includes digitally measured elytra length and width of each specimen, establishing a foundation for automated trait extraction using AI. Validated against manual measurements, our digital trait extraction achieves sub-millimeter precision, ensuring reliability for ecological and computational studies. By addressing invertebrate under-representation in trait databases, this work supports AI-driven tools for automated species identification and trait-based research, fostering advancements in biodiversity monitoring and conservation.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

Investigating a Model-Agnostic and Imputation-Free Approach for Irregularly-Sampled Multivariate Time-Series Modeling

Modeling Irregularly-sampled and Multivariate Time Series (IMTS) is crucial across a variety of applications where different sets of variates may be missing at different time-steps due to sensor malfunctions or high data acquisition costs. Existing approaches for IMTS either consider a two-stage impute-then-model framework or involve specialized architectures specific to a particular model and task. We perform a series of experiments to derive novel insights about the performance of IMTS methods on a variety of semi-synthetic and real-world datasets for both classification and forecasting. We also introduce Missing Feature-aware Time Series Modeling (MissTSM) or MissTSM, a novel model-agnostic and imputation-free approach for IMTS modeling. We show that MissTSM shows competitive performance compared to other IMTS approaches, especially when the amount of missing values is large and the data lacks simplistic periodic structures - conditions common to real-world IMTS applications.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

SeamCam: Quantifying Seamless Camouflage via Multi-Cue Visual Detectability

Animals are described as effectively camouflaged when they blend seamlessly with their surrounding, yet no standardized quantitative measure of this seamlessness exists. We address this gap by framing camouflage evaluation as a visual localization problem: a well-camouflaged animal is one that remains difficult to detect even when its category is known. We introduce SeamCam (Seamless Camouflage), a metric that quantifies how detectable an animal is from the available visual evidence. Given an image and a target species, SeamCam generates category-conditioned detection proposals, extracts segmentation masks, and identifies the subset whose collective union yields the highest IoU with the ground-truth mask. The SeamCam score is one minus this maximum recoverable localization signal, where a higher score indicates stronger camouflage (i.e., lower detectability). In a human two-alternative forced-choice study with 94 participants and 2,390 comparisons, SeamCam achieves 78.82% agreement with human camouflage difficulty judgments, outperforming state-of-the-art by about 25%. We then demonstrate SeamCam's utility as a preference signal for Direct Preference Optimization (DPO) to fine-tune a diffusion-based inpainting model for camouflage generation. This offers an affordable training approach with an objective explicitly suited for camouflage generation, unlike typical diffusion models. To support rigorous benchmarking, we further introduce CamFG-1.5k, a curated dataset of 1,521 high-resolution images in which animals are fully visible prior to camouflage generation, enabling unbiased evaluation by controlling for occlusion artifacts present in existing datasets. https://7amin.github.io/SeamCam/

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Physics-Guided Problem Decomposition for Scaling Deep Learning of High-dimensional Eigen-Solvers: The Case of Schrödinger's Equation

Given their ability to effectively learn non-linear mappings and perform fast inference, deep neural networks (NNs) have been proposed as a viable alternative to traditional simulation-driven approaches for solving high-dimensional eigenvalue equations (HDEs), which are the foundation for many scientific applications. Unfortunately, for the learned models in these scientific applications to achieve generalization, a large, diverse, and preferably annotated dataset is typically needed and is computationally expensive to obtain. Furthermore, the learned models tend to be memory- and compute-intensive primarily due to the size of the output layer. While generalization, especially extrapolation, with scarce data has been attempted by imposing physical constraints in the form of physics loss, the problem of model scalability has remained. In this paper, we alleviate the compute bottleneck in the output layer by using physics knowledge to decompose the complex regression task of predicting the high-dimensional eigenvectors into multiple simpler sub-tasks, each of which are learned by a simple "expert" network. We call the resulting architecture of specialized experts Physics-Guided Mixture-of-Experts (PG-MoE). We demonstrate the efficacy of such physics-guided problem decomposition for the case of the Schrödinger's Equation in Quantum Mechanics. Our proposed PG-MoE model predicts the ground-state solution, i.e., the eigenvector that corresponds to the smallest possible eigenvalue. The model is 150x smaller than the network trained to learn the complex task while being competitive in generalization. To improve the generalization of the PG-MoE, we also employ a physics-guided loss function based on variational energy, which by quantum mechanics principles is minimized iff the output is the ground-state solution.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

A Data-Driven Approach to Full-Field Damage and Failure Pattern Prediction in Microstructure-Dependent Composites using Deep Learning

An image-based deep learning framework is developed in this paper to predict damage and failure in microstructure-dependent composite materials. The work is motivated by the complexity and computational cost of high-fidelity simulations of such materials. The proposed deep learning framework predicts the post-failure full-field stress distribution and crack pattern in two-dimensional representations of the composites based on the geometry of microstructures. The material of interest is selected to be a high-performance unidirectional carbon fiber-reinforced polymer composite. The deep learning framework contains two stacked fully-convolutional networks, namely, Generator 1 and Generator 2, trained sequentially. First, Generator 1 learns to translate the microstructural geometry to the full-field post-failure stress distribution. Then, Generator 2 learns to translate the output of Generator 1 to the failure pattern. A physics-informed loss function is also designed and incorporated to further improve the performance of the proposed framework and facilitate the validation process. In order to provide a sufficiently large data set for training and validating the deep learning framework, 4500 microstructural representations are synthetically generated and simulated in an efficient finite element framework. It is shown that the proposed deep learning approach can effectively predict the composites' post-failure full-field stress distribution and failure pattern, two of the most complex phenomena to simulate in computational solid mechanics.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Maximizing Cohesion and Separation in Graph Representation Learning: A Distance-aware Negative Sampling Approach

The objective of unsupervised graph representation learning (GRL) is to learn a low-dimensional space of node embeddings that reflect the structure of a given unlabeled graph. Existing algorithms for this task rely on negative sampling objectives that maximize the similarity in node embeddings at nearby nodes (referred to as "cohesion") by maintaining positive and negative corpus of node pairs. While positive samples are drawn from node pairs that co-occur in short random walks, conventional approaches construct negative corpus by uniformly sampling random pairs, thus ignoring valuable information about structural dissimilarity among distant node pairs (referred to as "separation"). In this paper, we present a novel Distance-aware Negative Sampling (DNS) which maximizes the separation of distant node-pairs while maximizing cohesion at nearby node-pairs by setting the negative sampling probability proportional to the pair-wise shortest distances. Our approach can be used in conjunction with any GRL algorithm and we demonstrate the efficacy of our approach over baseline negative sampling methods over downstream node classification tasks on a number of benchmark datasets and GRL algorithms. All our codes and datasets are available at https://github.com/Distance-awareNS/DNS/.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Quadratic Residual Networks: A New Class of Neural Networks for Solving Forward and Inverse Problems in Physics Involving PDEs

We propose quadratic residual networks (QRes) as a new type of parameter-efficient neural network architecture, by adding a quadratic residual term to the weighted sum of inputs before applying activation functions. With sufficiently high functional capacity (or expressive power), we show that it is especially powerful for solving forward and inverse physics problems involving partial differential equations (PDEs). Using tools from algebraic geometry, we theoretically demonstrate that, in contrast to plain neural networks, QRes shows better parameter efficiency in terms of network width and depth thanks to higher non-linearity in every neuron. Finally, we empirically show that QRes shows faster convergence speed in terms of number of training epochs especially in learning complex patterns.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Physics-Guided Machine Learning for Scientific Discovery: An Application in Simulating Lake Temperature Profiles

Physics-based models of dynamical systems are often used to study engineering and environmental systems. Despite their extensive use, these models have several well-known limitations due to simplified representations of the physical processes being modeled or challenges in selecting appropriate parameters. While-state-of-the-art machine learning models can sometimes outperform physics-based models given ample amount of training data, they can produce results that are physically inconsistent. This paper proposes a physics-guided recurrent neural network model (PGRNN) that combines RNNs and physics-based models to leverage their complementary strengths and improves the modeling of physical processes. Specifically, we show that a PGRNN can improve prediction accuracy over that of physics-based models, while generating outputs consistent with physical laws. An important aspect of our PGRNN approach lies in its ability to incorporate the knowledge encoded in physics-based models. This allows training the PGRNN model using very few true observed data while also ensuring high prediction accuracy. Although we present and evaluate this methodology in the context of modeling the dynamics of temperature in lakes, it is applicable more widely to a range of scientific and engineering disciplines where physics-based (also known as mechanistic) models are used, e.g., climate science, materials science, computational chemistry, and biomedicine.

0 citations0 reviewsNo code linkedOpen access