Researcher profile

Annemarie Friedrich

Annemarie Friedrich contributes to research discovery and scholarly infrastructure.

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Published work

3 published item(s)

preprint2026arXiv

Is It Novel and Why? Fine-Grained Patent Novelty Prediction Based on Passage Retrieval

Novelty assessment is a critical yet complex task in the examination process for patent acceptance, requiring examiners to determine whether an invention is disclosed in a prior art document. The process involves intricate matching between specific features of a patent claim and passages in the prior art. While prior work has approached novelty prediction primarily as a binary classification task at the claim level, we argue that this formulation is susceptible to spurious correlations and lacks the granularity required for practical application. In this work, we introduce FiNE-Patents (Fine-grained Novelty Examination of Patents), a novel dataset comprising 3,658 first patent claims annotated with fine-grained, feature-level prior art references extracted from European Search Opinion (ESOP) documents. We propose shifting the evaluation paradigm from simple binary classification to a joint retrieval and abstract reasoning task at the feature level, requiring models to identify specific passages from a prior art document that disclose individual claim features, and to identify which features of a claim make it novel. We implement and evaluate LLM-based workflows that decompose claims into features, analyze each feature against prior art, and finally derive a claim-level novelty prediction. Our experiments demonstrate that these workflows outperform embedding-based baselines on passage retrieval and novel feature identification. Furthermore, we show that unlike trained classifiers, LLMs are robust against spurious correlations present in the claim-level novelty classification task. We release the dataset and code to foster further research into transparent and granular patent analysis.

preprint2022arXiv

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations

The COVID-19 pandemic has been severely impacting global society since December 2019. Massive research has been undertaken to understand the characteristics of the virus and design vaccines and drugs. The related findings have been reported in biomedical literature at a rate of about 10,000 articles on COVID-19 per month. Such rapid growth significantly challenges manual curation and interpretation. For instance, LitCovid is a literature database of COVID-19-related articles in PubMed, which has accumulated more than 200,000 articles with millions of accesses each month by users worldwide. One primary curation task is to assign up to eight topics (e.g., Diagnosis and Treatment) to the articles in LitCovid. Despite the continuing advances in biomedical text mining methods, few have been dedicated to topic annotations in COVID-19 literature. To close the gap, we organized the BioCreative LitCovid track to call for a community effort to tackle automated topic annotation for COVID-19 literature. The BioCreative LitCovid dataset, consisting of over 30,000 articles with manually reviewed topics, was created for training and testing. It is one of the largest multilabel classification datasets in biomedical scientific literature. 19 teams worldwide participated and made 80 submissions in total. Most teams used hybrid systems based on transformers. The highest performing submissions achieved 0.8875, 0.9181, and 0.9394 for macro F1-score, micro F1-score, and instance-based F1-score, respectively. The level of participation and results demonstrate a successful track and help close the gap between dataset curation and method development. The dataset is publicly available via https://ftp.ncbi.nlm.nih.gov/pub/lu/LitCovid/biocreative/ for benchmarking and further development.

preprint2020arXiv

The SOFC-Exp Corpus and Neural Approaches to Information Extraction in the Materials Science Domain

This paper presents a new challenging information extraction task in the domain of materials science. We develop an annotation scheme for marking information on experiments related to solid oxide fuel cells in scientific publications, such as involved materials and measurement conditions. With this paper, we publish our annotation guidelines, as well as our SOFC-Exp corpus consisting of 45 open-access scholarly articles annotated by domain experts. A corpus and an inter-annotator agreement study demonstrate the complexity of the suggested named entity recognition and slot filling tasks as well as high annotation quality. We also present strong neural-network based models for a variety of tasks that can be addressed on the basis of our new data set. On all tasks, using BERT embeddings leads to large performance gains, but with increasing task complexity, adding a recurrent neural network on top seems beneficial. Our models will serve as competitive baselines in future work, and analysis of their performance highlights difficult cases when modeling the data and suggests promising research directions.