Researcher profile

Ali Abbasi

Ali Abbasi contributes to research discovery and scholarly infrastructure.

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Published work

10 published item(s)

preprint2026arXiv

A Multimodal Data Processing Pipeline for MIMIC-IV Dataset

The MIMIC-IV dataset is a large, publicly available electronic health record (EHR) resource widely used for clinical machine learning research. It comprises multiple modalities, including structured data, clinical notes, waveforms, and imaging data. Working with these disjointed modalities requires an extensive manual effort to preprocess and align them for downstream analysis. While several pipelines for MIMIC-IV data extraction are available, they target a small subset of modalities or do not fully support arbitrary downstream applications. In this work, we greatly expand our prior popular unimodal pipeline and present a comprehensive and customizable multimodal pipeline that can significantly reduce multimodal processing time and enhance the reproducibility of MIMIC-based studies. Our pipeline systematically integrates the listed modalities, enabling automated cohort selection, temporal alignment across modalities, and standardized multimodal output formats suitable for arbitrary static and time-series downstream applications. We release the code, a simple UI, and a Python package for selective integration (with embedding) at https://github.com/healthylaife/MIMIC-IV-Data-Pipeline.

preprint2026arXiv

ConQuR: Corner Aligned Activation Quantization via Optimized Rotations for LLMs

Large language models (LLMs) are costly to deploy due to their large memory footprint and high inference cost. Weight-activation quantization can reduce these costs, but low-bit activation quantization remains difficult because activation outliers induce large quantization error. Recent rotation-based methods address this by applying orthogonal transformations that redistribute activation magnitude across dimensions, but existing approaches either require expensive end-to-end rotation training or rely on stored activation corpora, introducing significant compute or storage overhead. We propose a lightweight post-training rotation calibration method for LLM activation quantization. Our method learns orthogonal rotations that align normalized activations with the corners of an inscribed hypercube, encouraging activation energy to be distributed more evenly across dimensions. This objective admits an efficient closed-form update via the orthogonal Procrustes problem, avoiding gradient-based optimization over the orthogonal group. We further introduce an online calibration procedure that updates rotations as calibration samples are processed, eliminating the need to store activations on disk and allowing rotations to adapt to quantized activation distributions during calibration. Experiments on Llama-2 and Llama-3 models from 3B to 70B parameters show that our method achieves competitive or improved performance across perplexity benchmarks and common sense reasoning tasks while avoiding both costly end-to-end training and large offline activation storage.

preprint2026arXiv

HoneySat: A Network-based Satellite Honeypot Framework

Satellites are the backbone of several mission-critical services that enable our modern society to function, for example, GPS. For years, satellites were assumed to be secure because of their indecipherable architectures and the reliance on security by obscurity. However, technological advancements have made these assumptions obsolete, paving the way for potential attacks, and sparking interest in satellite security. Unfortunately, to this day, there is no efficient way to collect data on adversarial techniques for satellites, hurting the generation of security intelligence that can lead to the development of effective countermeasures. In this paper, we present HoneySat, the first high-interaction satellite honeypot framework, fully capable of convincingly simulating a real-world CubeSat, a type of Small Satellite (SmallSat). To provide evidence of HoneySat's effectiveness, we surveyed experienced SmallSat operators in charge of in-orbit satellites and deployed HoneySat over the Internet to entice adversaries. Our results show that 90% of satellite operators agreed that HoneySat provides a realistic and engaging simulation of a SmallSat mission. Additionally, HoneySat successfully deceived human adversaries in the wild and collected 22 real-world satellite-specific adversarial interactions. Finally, in a major demonstration of HoneySat's robustness, we collaborated with an aerospace company to perform a hardware-in-the-loop operation that resulted in HoneySat successfully communicating with an in-orbit, operational SmallSat mission.

preprint2026arXiv

IO-SVD: Input-Output Whitened SVD for Adaptive-Rank LLM Compression

Large language models deliver strong performance across language and reasoning tasks, but their storage and compute costs remain major barriers to deployment in resource-constrained and latency-sensitive settings. SVD-based post-training compression offers a hardware-agnostic way to reduce model size and improve inference efficiency through low-rank factorization. However, existing methods often rely on input-only whitening spaces, homogeneous rank allocation, or loss-agnostic allocation heuristics, limiting their ability to preserve model quality under aggressive compression. We propose Input-Output Whitened SVD (IO-SVD), a post-training compression method that forms a KL-aware double-sided whitening space for model weights. Using a second-order expansion of the KL loss over the top-K token probabilities, IO-SVD constructs an output-side metric that captures predictive sensitivity, while input whitening captures activation statistics. We further introduce an efficient heterogeneous rank-allocation strategy that scores whitened singular components using first-order calibration loss estimates and prunes the least sensitive components under a global budget. Inspired by prior work that combines SVD truncation with quantization, we improve hybrid SVD-quantization compression through loss-aware remapping, which selects low-rank factor rows for 8-bit quantization based on the predicted loss change incurred by quantizing them. Extensive experiments across diverse LLM and VLM families, and inference-time analysis shows that IO-SVD compresses LLMs with minimal performance degradation while delivering practical inference speedups. Code is available at https://github.com/mint-vu/IO-SVD.git

preprint2026arXiv

Knowledge Distillation and Dataset Distillation of Large Language Models: Emerging Trends, Challenges, and Future Directions

The exponential growth of Large Language Models (LLMs) continues to highlight the need for efficient strategies to meet ever-expanding computational and data demands. This survey provides a comprehensive analysis of two complementary paradigms: Knowledge Distillation (KD) and Dataset Distillation (DD), both aimed at compressing LLMs while preserving their advanced reasoning capabilities and linguistic diversity. We first examine key methodologies in KD, such as task-specific alignment, rationale-based training, and multi-teacher frameworks, alongside DD techniques that synthesize compact, high-impact datasets through optimization-based gradient matching, latent space regularization, and generative synthesis. Building on these foundations, we explore how integrating KD and DD can produce more effective and scalable compression strategies. Together, these approaches address persistent challenges in model scalability, architectural heterogeneity, and the preservation of emergent LLM abilities. We further highlight applications across domains such as healthcare and education, where distillation enables efficient deployment without sacrificing performance. Despite substantial progress, open challenges remain in preserving emergent reasoning and linguistic diversity, enabling efficient adaptation to continually evolving teacher models and datasets, and establishing comprehensive evaluation protocols. By synthesizing methodological innovations, theoretical foundations, and practical insights, our survey charts a path toward sustainable, resource-efficient LLMs through the tighter integration of KD and DD principles.

preprint2022arXiv

Sparsity and Heterogeneous Dropout for Continual Learning in the Null Space of Neural Activations

Continual/lifelong learning from a non-stationary input data stream is a cornerstone of intelligence. Despite their phenomenal performance in a wide variety of applications, deep neural networks are prone to forgetting their previously learned information upon learning new ones. This phenomenon is called "catastrophic forgetting" and is deeply rooted in the stability-plasticity dilemma. Overcoming catastrophic forgetting in deep neural networks has become an active field of research in recent years. In particular, gradient projection-based methods have recently shown exceptional performance at overcoming catastrophic forgetting. This paper proposes two biologically-inspired mechanisms based on sparsity and heterogeneous dropout that significantly increase a continual learner's performance over a long sequence of tasks. Our proposed approach builds on the Gradient Projection Memory (GPM) framework. We leverage k-winner activations in each layer of a neural network to enforce layer-wise sparse activations for each task, together with a between-task heterogeneous dropout that encourages the network to use non-overlapping activation patterns between different tasks. In addition, we introduce two new benchmarks for continual learning under distributional shift, namely Continual Swiss Roll and ImageNet SuperDog-40. Lastly, we provide an in-depth analysis of our proposed method and demonstrate a significant performance boost on various benchmark continual learning problems.

preprint2022arXiv

Teaching Networks to Solve Optimization Problems

Leveraging machine learning to facilitate the optimization process is an emerging field that holds the promise to bypass the fundamental computational bottleneck caused by classic iterative solvers in critical applications requiring near-real-time optimization. The majority of existing approaches focus on learning data-driven optimizers that lead to fewer iterations in solving an optimization. In this paper, we take a different approach and propose to replace the iterative solvers altogether with a trainable parametric set function, that outputs the optimal arguments/parameters of an optimization problem in a single feed forward. We denote our method as Learning to Optimize the Optimization Process (LOOP). We show the feasibility of learning such parametric (set) functions to solve various classic optimization problems including linear/nonlinear regression, principal component analysis, transport-based coreset, and quadratic programming in supply management applications. In addition, we propose two alternative approaches for learning such parametric functions, with and without a solver in the LOOP. Finally, through various numerical experiments, we show that the trained solvers could be orders of magnitude faster than the classic iterative solvers while providing near optimal solutions.

preprint2022arXiv

Technical Report: Hardening Code Obfuscation Against Automated Attacks

Software obfuscation is a crucial technology to protect intellectual property and manage digital rights within our society. Despite its huge practical importance, both commercial and academic state-of-the-art obfuscation methods are vulnerable to a plethora of automated deobfuscation attacks, such as symbolic execution, taint analysis, or program synthesis. While several enhanced obfuscation techniques were recently proposed to thwart taint analysis or symbolic execution, they either impose a prohibitive runtime overhead or can be removed in an automated way (e.g., via compiler optimizations). In general, these techniques suffer from focusing on a single attack vector, allowing an attacker to switch to other, more effective techniques, such as program synthesis. In this work, we present Loki, an approach for software obfuscation that is resilient against all known automated deobfuscation attacks. To this end, we use and efficiently combine multiple techniques, including a generic approach to synthesize formally verified expressions of arbitrary complexity. Contrary to state-of-the-art approaches that rely on a few hardcoded generation rules, our expressions are more diverse and harder to pattern match against. Even the most recent state-of-the-art research on Mixed-Boolean Arithmetic (MBA) deobfuscation fails to simplify them. Moreover, Loki protects against previously unaccounted attack vectors such as program synthesis, for which it reduces the success rate to merely 19%. In a comprehensive evaluation, we show that our design incurs significantly less overhead while providing a much stronger protection level compared to existing works.

preprint2021arXiv

Nyx-Net: Network Fuzzing with Incremental Snapshots

Coverage-guided fuzz testing ("fuzzing") has become mainstream and we have observed lots of progress in this research area recently. However, it is still challenging to efficiently test network services with existing coverage-guided fuzzing methods. In this paper, we introduce the design and implementation of Nyx-Net, a novel snapshot-based fuzzing approach that can successfully fuzz a wide range of targets spanning servers, clients, games, and even Firefox's Inter-Process Communication (IPC) interface. Compared to state-of-the-art methods, Nyx-Net improves test throughput by up to 300x and coverage found by up to 70%. Additionally, Nyx-Net is able to find crashes in two of ProFuzzBench's targets that no other fuzzer found previously. When using Nyx-Net to play the game Super Mario, Nyx-Net shows speedups of 10-30x compared to existing work. Under some circumstances, Nyx-Net is even able play "faster than light": solving the level takes less wall-clock time than playing the level perfectly even once. Nyx-Net is able to find previously unknown bugs in servers such as Lighttpd, clients such as MySQL client, and even Firefox's IPC mechanism - demonstrating the strength and versatility of the proposed approach. Lastly, our prototype implementation was awarded a $20.000 bug bounty for enabling fuzzing on previously unfuzzable code in Firefox and solving a long-standing problem at Mozilla.

preprint2020arXiv

Challenges in Designing Exploit Mitigations for Deeply Embedded Systems

Memory corruption vulnerabilities have been around for decades and rank among the most prevalent vulnerabilities in embedded systems. Yet this constrained environment poses unique design and implementation challenges that significantly complicate the adoption of common hardening techniques. Combined with the irregular and involved nature of embedded patch management, this results in prolonged vulnerability exposure windows and vulnerabilities that are relatively easy to exploit. Considering the sensitive and critical nature of many embedded systems, this situation merits significant improvement. In this work, we present the first quantitative study of exploit mitigation adoption in 42 embedded operating systems, showing the embedded world to significantly lag behind the general-purpose world. To improve the security of deeply embedded systems, we subsequently present μArmor, an approach to address some of the key gaps identified in our quantitative analysis. μArmor raises the bar for exploitation of embedded memory corruption vulnerabilities, while being adoptable on the short term without incurring prohibitive extra performance or storage costs.