Researcher profile

Alec Kirkley

Alec Kirkley contributes to research discovery and scholarly infrastructure.

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Published work

8 published item(s)

preprint2026arXiv

Estimation of partial rankings from sparse, noisy comparisons

Ranking items based on pairwise comparisons is common, from using match outcomes to rank sports teams to using purchase or survey data to rank consumer products. Statistical inference-based methods such as the Bradley-Terry model, which extract rankings based on an underlying generative model, have emerged as flexible and powerful tools to tackle ranking in empirical data. In situations with limited and/or noisy comparisons, it is often challenging to confidently distinguish the performance of different items based on the evidence available in the data. However, most inference-based ranking methods choose to assign each item to a unique rank or score, suggesting a meaningful distinction when there is none. Here, we develop a principled nonparametric Bayesian method, adaptable to any statistical ranking method, for learning partial rankings (rankings with ties) that distinguishes among the ranks of different items only when there is sufficient evidence available in the data. We develop a fast agglomerative algorithm to perform Maximum A Posteriori (MAP) inference of partial rankings under our framework and examine the performance of our method on a variety of real and synthetic network datasets, finding that it frequently gives a more parsimonious summary of the data than traditional ranking, particularly when observations are sparse.

preprint2026arXiv

Scalable inference of spatial regions and temporal signatures from time series

Regionalization aims to partition a spatial domain into contiguous regions that share similar characteristics, enabling more effective spatial analysis, policy making, and resource management. Existing approaches for spatial regionalization typically rely on static spatial snapshots rather than evolving time series. Meanwhile, most time series clustering methods ignore spatial structure or enforce spatial continuity through ad hoc regularization, constraining the number of inferred regions a priori either explicitly or implicitly. Utilizing the minimum description length principle from information theory, here we propose an efficient and fully nonparametric framework for the regionalization of spatial time series. Our method jointly infers a spatial partition along with a set of representative time series archetypes ("drivers") that best compress a spatiotemporal dataset, with a runtime log-linear in the number of time series. We demonstrate that this method can accurately recover planted regional structure and drivers in synthetic time series, and can extract meaningful structural regularities in large-scale empirical air quality and vegetation index records. Our method provides a principled and scalable framework for spatially contiguous partitioning, allowing interpretable temporal patterns and homogeneous regions to emerge directly from the data itself.

preprint2026arXiv

Structural reducibility of hypergraphs

Higher-order interactions provide a nuanced understanding of the relational structure of complex systems beyond traditional pairwise interactions. However, higher-order network analyses also incur more cumbersome interpretations and greater computational demands than their pairwise counterparts. Here we present an information-theoretic framework for determining the extent to which a hypergraph representation of a networked system is structurally redundant, and for identifying its most critical higher orders of interaction that allow us to remove these redundancies while preserving essential higher-order structure.

preprint2022arXiv

Clustering of heterogeneous populations of networks

Statistical methods for reconstructing networks from repeated measurements typically assume that all measurements are generated from the same underlying network structure. This need not be the case, however. People's social networks might be different on weekdays and weekends, for instance. Brain networks may differ between healthy patients and those with dementia or other conditions. Here we describe a Bayesian analysis framework for such data that allows for the fact that network measurements may be reflective of multiple possible structures. We define a finite mixture model of the measurement process and derive a fast Gibbs sampling procedure that samples exactly from the full posterior distribution of model parameters. The end result is a clustering of the measured networks into groups with similar structure. We demonstrate the method on both real and synthetic network populations.

preprint2022arXiv

Impact of urban structure on infectious disease spreading

The ongoing SARS-CoV-2 pandemic has been holding the world hostage for more than a year now. Mobility is key to viral spreading and its restriction is the main non-pharmaceutical interventions to fight the virus expansion. Previous works have shown a connection between the structural organization of cities and the movement patterns of their residents. This puts urban centers in the focus of epidemic surveillance and interventions. Here we show that the organization of urban flows has a tremendous impact on disease spreading and on the amenability of different mitigation strategies. By studying anonymous and aggregated intra-urban flows in a variety of cities in the United States and other countries, and a combination of empirical analysis and analytical methods, we demonstrate that the response of cities to epidemic spreading can be roughly classified in two major types according to the overall organization of those flows. Hierarchical cities, where flows are concentrated primarily between mobility hotspots, are particularly vulnerable to the rapid spread of epidemics. Nevertheless, mobility restrictions in such types of cities are very effective in mitigating the spread of a virus. Conversely, in sprawled cities which present many centers of activity, the spread of an epidemic is much slower, but the response to mobility restrictions is much weaker and less effective. Investing resources on early monitoring and prompt ad-hoc interventions in more vulnerable cities may prove helpful in containing and reducing the impact of future pandemics.

preprint2022arXiv

Representative community divisions of networks

Methods for detecting community structure in networks typically aim to identify a single best partition of network nodes into communities, often by optimizing some objective function, but in real-world applications there may be many competitive partitions with objective scores close to the global optimum and one can obtain a more informative picture of the community structure by examining a representative set of such high-scoring partitions than by looking at just the single optimum. However, such a set can be difficult to interpret since its size can easily run to hundreds or thousands of partitions. In this paper we present a method for analyzing large partition sets by dividing them into groups of similar partitions and then identifying an archetypal partition as a representative of each group. The resulting set of archetypal partitions provides a succinct, interpretable summary of the form and variety of community structure in any network. We demonstrate the method on a range of example networks.

preprint2020arXiv

Mixing Patterns in Interdisciplinary Collaboration Networks: Assessing Interdisciplinarity Through Multiple Lenses

There are inherent challenges to interdisciplinary research collaboration, such as bridging cognitive gaps and balancing transaction costs with collaborative benefits. This raises the question: Does interdisciplinary research necessarily result in interdisciplinary collaborations? This study aims to explore this question and assess collaboration preferences in interdisciplinary research at the individual, dyadic, and team level by examining mixing patterns in a collaboration network. Using a network of over 2,000 researchers from the field of artificial intelligence in education, we find that "interdisciplinarity" is demonstrated by diverse research experiences of individual researchers rather than diversity among researchers within collaborations. We also examine intergroup mixing by applying a novel approach to classify the active and non-active researchers in the collaboration network based on participation in multiple teams. We find a significant difference in indicators of academic performance and experience between the clusters of active and non-active researchers, suggesting intergroup mixing as a key factor in academic success. Our results shed light on the nature of team formation in interdisciplinary research, as well as highlight the importance of interdisciplinary programs.

preprint2020arXiv

Online geolocalized emotion across US cities during the COVID crisis: Universality, policy response, and connection with local mobility

As the COVID-19 pandemic began to sweep across the US it elicited a wide spectrum of responses, both online and offline, across the population. To aid the development of effective spatially targeted interventions in the midst of this turmoil, it is important to understand the geolocalization of these online emotional responses, as well as their association with offline behavioral responses. Here, we analyze around 13 million geotagged tweets in 49 cities across the US from the first few months of the pandemic to assess regional dependence in online sentiments with respect to a few major topics, and how these sentiments correlate with policy development and human mobility. Surprisingly, we observe universal trends in overall and topic-based sentiments across cities over the time period studied, with variability primarily seen only in the immediate impact of federal guidelines and local lockdown policies. We also find that these local sentiments are highly correlated with and predictive of city-level mobility, while the correlations between sentiments and local cases and deaths are relatively weak. Our findings point to widespread commonalities in the online public emotional responses to COVID across the US, both temporally and relative to offline indicators, in contrast with the high variability seen in early local containment policies. This study also provides new insights into the use of social media data in crisis management by integrating offline data to gain an in-depth understanding of public emotional responses, policy development, and local mobility.