Tight Bounds for Active Self-Assembly Using an Insertion Primitive

preprint2015arXivOpen access

Abstract

We prove two tight bounds on the behavior of a model of self-assembling particles introduced by Dabby and Chen (SODA 2013), called insertion systems, where monomers insert themselves into the middle of a growing linear polymer. First, we prove that the expressive power of these systems is equal to context-free grammars, answering a question posed by Dabby and Chen. Second, we prove that systems of kk monomer types can deterministically construct polymers of length n=2Θ(k3/2)n = 2^{Θ(k^{3/2})} in O(log⁡5/3(n))O(\log^{5/3}(n)) expected time, and that this is optimal in both the number of monomer types and expected time.

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