Scattering function of semiflexible polymer chains under good solvent conditions

preprint2012arXivOpen access

Abstract

Using the pruned-enriched Rosenbluth Monte Carlo algorithm, the scattering functions of semiflexible macromolecules in dilute solution under good solvent conditions are estimated both in d=2d=2 and d=3d=3 dimensions, considering also the effect of stretching forces. Using self-avoiding walks of up to N=25600N = 25600 steps on the square and simple cubic lattices, variable chain stiffness is modeled by introducing an energy penalty εbε_b for chain bending; varying qb=exp⁡(−εb/kBT)q_b=\exp (- ε_b/k_BT) from qb=1q_b=1 (completely flexible chains) to qb=0.005q_b = 0.005, the persistence length can be varied over two orders of magnitude. For unstretched semiflexible chains we test the applicability of the Kratky-Porod worm-like chain model to describe the scattering function, and discuss methods for extracting persistence length estimates from scattering. While in d=2d=2 the direct crossover from rod-like chains to self-avoiding walks invalidates the Kratky-Porod description, it holds in d=3d=3 for stiff chains if the number of Kuhn segments nKn_K does not exceed a limiting value nK∗n^*_K (which depends on the persistence length). For stretched chains, the Pincus blob size enters as a further characteristic length scale. The anisotropy of the scattering is well described by the modified Debye function, if the actual observed chain extension <X><X> (end-to-end distance in the direction of the force) as well as the corresponding longitudinal and transverse linear dimensions <X2>−<X>2<X^2> - <X>^2, <Rg,⊥2><R_{g,\bot}^2> are used.

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