Polymer translocation into laterally unbounded confined environments

preprint2010arXivOpen access

Abstract

Using Langevin dynamics simulations in three dimensions (3D), we investigate the dynamics of polymer translocation into the regions between two parallel plane walls with separation RR under a driving force FF, respectively. Compared with an unconfined environment, the translocation dynamics is greatly changed due to the crowding effect of the partially translocated monomers. Translocation time ττ initially decreases rapidly with increasing RR and then saturates for larger RR, and the confined environment leads to a nonuniversal dependence of ττ on FF.

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