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mendelFix: a Perl script for checking Mendelian errors in high density SNP data of trio designs

Here we present mendelFix, a Perl script for checking Mendelian errors in genome-wide SNP data of trio designs. The program takes 12-recoded PLINK PED and MAP files as input to calculate a series of summary statistics for Mendelian errors, sets missing offspring genotypes that present Mendelian inconsistencies, and implements a simplistic procedure to infer missing genotypes using parent information. The program can be easily incorporated in any pipeline for family-based SNP data analysis, and is distributed as free software under the GNU General Public License.

preprint2013arXivOpen access
Yuri Tani UtsunomiyaRodrigo Vitorio AlonsoAdriana Santana do CarmoFrancine CampagnariJosé Antonio VinsintinJosé Fernando Garcia
Genomics
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Open access6 authors1 topic
Imported metadata coverageMissing code, dataset, citation and institution fields are tracked without dominating the paper.Details
Citations: 0Reviews: 0Saves: 0Code: not linkedDataset: not linkedInstitutions: 0

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Yuri Tani UtsunomiyaRodrigo Vitorio AlonsoAdriana Santana do CarmoFrancine CampagnariJosé Antonio VinsintinJosé Fernando Garcia

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