Paper detail

Efficiency of the Girsanov transformation approach for parametric sensitivity analysis of stochastic chemical kinetics

Most common Monte Carlo methods for sensitivity analysis of stochastic reaction networks are the finite difference (FD), the Girsanov transformation (GT) and the regularized pathwise derivative (RPD) methods. It has been numerically observed in the literature, that the biased FD and RPD methods tend to have lower variance than the unbiased GT method and that centering the GT method (CGT) reduces its variance. We provide a theoretical justification for these observations in terms of system size asymptotic analysis under what is known as the classical scaling. Our analysis applies to GT, CGT and FD, and shows that the standard deviations of their estimators when normalized by the actual sensitivity, scale as $\mathcal{O}(N^{1/2}), \mathcal{O}(1)$ and $\mathcal{O}(N^{-1/2})$ respectively, as system size $N \to \infty$. In the case of the FD methods, the $N \to \infty$ asymptotics are obtained keeping the finite difference perturbation $h$ fixed. Our numerical examples verify that our order estimates are sharp and that the variance of the RPD method scales similarly to the FD methods. We combine our large $N$ asymptotics with previously known small $h$ asymptotics to obtain the best choice of $h$ in terms of $N$, and estimate the number $N_s$ of simulations required to achieve a prescribed relative $\mathcal{L}_2$ error $δ$. This shows that $N_s$ depends on $δ$ and $N$ as $δ^{-2 - \frac{γ_2}{γ_1}} N^{-1}, δ^{-2}$ and $N δ^{-2}$, for FD, CGT and GT respectively. Here $γ_1 >0, γ_2>0$ depend on the type of FD method used.

preprint2016arXivOpen access

Signal facts

What is known right now

Open access2 authors1 topic

Next steps

Decide what to do with this paper

Use like or dislike for the fast social read. The more specific scholarly feedback stays available below when needed.

Log in to curate

Reading frame

Keep the important context close to the paper

Keep the important signals around this paper in one place: votes, save state, collection context, reviews and the metadata you need before deciding what to do next.

Institutions

Add specific reaction

Move through the context

Research map

Open full explorer

Move through nearby people, institutions, topics and adjacent work without leaving the paper page.

Building this map preview

BZPEER is loading the nearby papers, people, topics and institutions for this page.

Structured reviews

0 review(s)

ContributeLeave structured feedbackUse the review template when you have a concrete strength, concern or method question.Open review form

No structured reviews yet. High-signal critique starts here.

Work discussion

0 comment(s)

DiscussAdd a high-signal commentKeep quick notes, caveats and replication pointers separate from formal reviews.Open comment form

No discussion yet. The first strong comment sets the tone.