Dissimilarity maps on trees and the representation theory of $GL_n(\C)$

preprint2011arXivOpen access

Abstract

We revisit the representation theory in type AAused previously to establish that the dissimilarity vectors of phylogenetic trees are points on the tropical Grassmannian variety. We use a different version of this construction to show that the space of phylogenetic trees KnK_n maps to the tropical varieties of every flag variety of $GL_n(\C).$ Using this map, we interpret the tropicalization of the semistandard tableaux basis of an irreducible representation of $GL_n(\C)$ as combinatorial invariants of phylogenetic trees.

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