Paper detail

Complex-valued K-means clustering of interpolative separable density fitting algorithm for large-scale hybrid functional enabled \textit{ab initio} molecular dynamics simulations within plane waves

K-means clustering, as a classic unsupervised machine learning algorithm, is the key step to select the interpolation sampling points in interpolative separable density fitting (ISDF) decomposition. Real-valued K-means clustering for accelerating the ISDF decomposition has been demonstrated for large-scale hybrid functional enabled \textit{ab initio} molecular dynamics (hybrid AIMD) simulations within plane-wave basis sets where the Kohn-Sham orbitals are real-valued. However, it is unclear whether such K-means clustering works for complex-valued Kohn-Sham orbitals. Here, we apply the K-means clustering into hybrid AIMD simulations for complex-valued Kohn-Sham orbitals and use an improved weight function defined as the sum of the square modulus of complex-valued Kohn-Sham orbitals in K-means clustering. Numerical results demonstrate that this improved weight function in K-means clustering algorithm yields smoother and more delocalized interpolation sampling points, resulting in smoother energy potential, smaller energy drift and longer time steps for hybrid AIMD simulations compared to the previous weight function used in the real-valued K-means algorithm. In particular, we find that this improved algorithm can obtain more accurate oxygen-oxygen radial distribution functions in liquid water molecules and more accurate power spectrum in crystal silicon dioxide compared to the previous K-means algorithm. Finally, we describe a massively parallel implementation of this ISDF decomposition to accelerate large-scale complex-valued hybrid AIMD simulations containing thousands of atoms (2,744 atoms), which can scale up to 5,504 CPU cores on modern supercomputers.

preprint2024arXivOpen access
0citations
0reviews
0saves
Nocode
Nodataset
0institutions

Next steps

Decide what to do with this paper

Use like or dislike for the fast social read. The more specific scholarly feedback stays available below when needed.

Log in to curate

Reading frame

Keep the important context close to the paper

Keep the important signals around this paper in one place: votes, save state, collection context, reviews and the metadata you need before deciding what to do next.

Institutions

Add specific reaction

Move through the context

Research map

Open full explorer

Move through nearby people, institutions, topics and adjacent work without leaving the paper page.

Building this graph slice

BZPEER is loading the nearby papers, people, topics and institutions for this page.

Structured reviews

0 review(s)

ContributeLeave structured feedbackUse the review template when you have a concrete strength, concern or method question.Open review form

No structured reviews yet. High-signal critique starts here.

Work discussion

0 comment(s)

DiscussAdd a high-signal commentKeep quick notes, caveats and replication pointers separate from formal reviews.Open comment form

No discussion yet. The first strong comment sets the tone.