Paper detail

Comment on "Length-dependent translation of messenger RNA by ribosomes"

In the recent paper of Valleriani {\it et al} [Phys. Rev. E {\bf 83}, 042903 (2011)], a simple model for describing the translation of messenger RNA (mRNA) by ribosomes is presented, and an expression of the translational ratio $r$, defined as the ratio of translation rate $ω_{\rm tl}$ of protein from mRNA to degradation rate $ω_p$ of protein, is obtained. The key point to get this ratio $r$ is to get the translation rate $ω_{\rm tl}$. In the study of Valleriani {\it et al}, $ω_{\rm tl}$ is assumed to be the mean value of measured translation rate, i.e. the mean value of ratio of the translation number of protein to the lifetime of mRNA. However, in experiments different methods might be used to get $ω_{\rm tl}$. Therefore, for the sake of future application of their model to more experimental data analysis, in this comment three methods to get the translation rate $ω_{\rm tl}$, and consequently the translational ratio $r$, are provided. Based on one of the methods which might be employed in most of the experiments, we find that the translational ratio $r$ decays exponentially with the length of mRNA in prokaryotic cells, and decays reciprocally with the length of mRNA in eukaryotic cells. This result is slight different from that obtained in Valleriani's study.

preprint2011arXivOpen access

Signal facts

What is known right now

Open access1 author2 topics

Next steps

Decide what to do with this paper

Use like or dislike for the fast social read. The more specific scholarly feedback stays available below when needed.

Log in to curate

Reading frame

Keep the important context close to the paper

Keep the important signals around this paper in one place: votes, save state, collection context, reviews and the metadata you need before deciding what to do next.

Institutions

Add specific reaction

Move through the context

Research map

Open full explorer

Move through nearby people, institutions, topics and adjacent work without leaving the paper page.

Building this map preview

BZPEER is loading the nearby papers, people, topics and institutions for this page.

Structured reviews

0 review(s)

ContributeLeave structured feedbackUse the review template when you have a concrete strength, concern or method question.Open review form

No structured reviews yet. High-signal critique starts here.

Work discussion

0 comment(s)

DiscussAdd a high-signal commentKeep quick notes, caveats and replication pointers separate from formal reviews.Open comment form

No discussion yet. The first strong comment sets the tone.