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Chaining fragments in sequences: to sweep or not

Computing an optimal chain of fragments is a classical problem in string algorithms, with important applications in computational biology. There exist two efficient dynamic programming algorithms solving this problem, based on different principles. In the present note, we show how it is possible to combine the principles of two of these algorithms in order to design a hybrid dynamic programming algorithm that combines the advantages of both algorithms.

preprint2015arXivOpen access
Julien AllaliLaetitia BourgeadeCedric Chauve
Data Structures and Algorithms
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Open access3 authors1 topic
Imported metadata coverageMissing code, dataset, citation and institution fields are tracked without dominating the paper.Details
Citations: 0Reviews: 0Saves: 0Code: not linkedDataset: not linkedInstitutions: 0

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Julien AllaliLaetitia BourgeadeCedric Chauve

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