Capturing a phylogenetic tree when the number of character states varies with the number of leaves

preprint2015arXivOpen access

Abstract

We show that for any two values α,β>0α, β>0 for which α+β>1α+β>1 then there is a value NN so that for all n≥Nn \geq N the following holds. For any binary phylogenetic tree TT on nn leaves there is a set of ⌊nα⌋\lfloor n^α\rfloor characters that capture TT, and for which each character takes at most ⌊nβ⌋\lfloor n^β\rfloor distinct states. Here `capture' means that TT is the unique perfect phylogeny for these characters. Our short proof of this combinatorial result is based on the probabilistic method.

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