Canonical dual theory applied to a Lennard-Jones potential minimization problem

preprint2012arXivOpen access

Abstract

The simplified Lennard-Jones (LJ) potential minimization problem is f(x)=4∑i=1N∑j=1,j<iN(1τij6−1τij3)subjecttox∈Rn,f(x)=4\sum_{i=1}^N \sum_{j=1,j<i}^N (\frac{1}{τ_{ij}^6} -\frac{1}{τ_{ij}^3}) {subject to} x\in \mathbb{R}^n, where τij=(x3i−2−x3j−2)2+(x3i−1−x3j−1)2+(x3i−x3j)2τ_{ij}=(x_{3i-2}-x_{3j-2})^2 +(x_{3i-1}-x_{3j-1})^2 +(x_{3i} -x_{3j})^2, (x3i−2,x3i−1,x3i)(x_{3i-2},x_{3i-1},x_{3i}) is the coordinates of atom ii in R3\mathbb{R}^3, i,j=1,2,...,N(≥2integer)i,j=1,2,...,N(\geq 2 \quad \text{integer}), n=3Nn=3N and NN is the whole number of atoms. The nonconvexity of the objective function and the huge number of local minima, which is growing exponentially with NN, interest many mathematical optimization experts. In this paper, the canonical dual theory elegantly tackles this problem illuminated by the amyloid fibril molecular model building. Keywords: Mathematical Canonical Duality Theory ⋅\cdot Mathematical Optimization ⋅\cdot Lennard-Jones Potential Minimization Problem ⋅\cdot Global Optimization.

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