Paper detail

A simple mechanism for controlling the onset and arrest of collective oscillations in genetic circuits

We study a system of dynamical units, each of which shows excitable or oscillatory behavior, depending on the choice of parameters. When we couple these units with repressive bonds, we can control the duration of collective oscillations for an intermediate period between collective fixed-point behavior. The control mechanism works by monotonically increasing a single bifurcation parameter. Both the onset and arrest of oscillations are due to bifurcations. Depending on the coupling strength, the network topology and the tuning speed, our numerical simulations reveal a rich dynamics out-of-equilibrium with multiple inherent time scales, long transients towards the stationary states and interesting transient patterns like self-organized pacemakers. Zooming into the transition regime, we pursue the arrest of oscillations along the arms of spirals. We point out possible relations to the genetic network of segmentation clocks.