'Bureaucratic' set systems, and their role in phylogenetics

preprint2011arXivOpen access

Abstract

We say that a collection $\Cc$ of subsets of XX is {\em bureaucratic} if every maximal hierarchy on XX contained in $\Cc$ is also maximum. We characterise bureaucratic set systems and show how they arise in phylogenetics. This framework has several useful algorithmic consequences: we generalize some earlier results and derive a polynomial-time algorithm for a parsimony problem arising in phylogenetic networks.

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