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Yanqi Huang

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Published work

4 published item(s)

preprint2026arXiv

From Knowledge to Action: Outcomes of the 2025 Large Language Model (LLM) Hackathon for Applications in Materials Science and Chemistry

Large language models (LLMs) are rapidly changing how researchers in materials science and chemistry discover, organize, and act on scientific knowledge. This paper analyzes a broad set of community-developed LLM applications in an effort to identify emerging patterns in how these systems can be used across the scientific research lifecycle. We organize the projects into two complementary categories: Knowledge Infrastructure, systems that structure, retrieve, synthesize, and validate scientific information; and Action Systems, systems that execute, coordinate, or automate scientific work across computational and experimental environments. The submissions reveal a shift from single-purpose LLM tools toward integrated, multi-agent workflows that combine retrieval, reasoning, tool use, and domain-specific validation. Prominent themes include retrieval-augmented generation as grounding infrastructure, persistent structured knowledge representations, multimodal and multilingual scientific inputs, and early progress toward laboratory-integrated closed-loop systems. Together, these results suggest that LLMs are evolving from general-purpose assistants into composable infrastructure for scientific reasoning and action. This work provides a community snapshot of that transition and a practical taxonomy for understanding emerging LLM-enabled workflows in materials science and chemistry.

preprint2020arXiv

Experimental and numerical studies on kV scattered x-ray imaging for real-time image guidance in radiation therapy

Motion management is a critical component of image guidance radiotherapy for lung cancer. We previously proposed a scheme using kV scattered x-ray photons for marker-less real-time image guidance in lung cancer radiotherapy. This study reports our recently progress using the photon counting detection technique to demonstrate potential feasibility of this method and using Monte Carlo (MC) simulations and ray-tracing calculations to characterize the performance. In our scheme, a thin slice of x-ray beam was directed to the target and we measured the outgoing scattered photons using a photon counting detector with a parallel-hole collimator to establish the correspondence between detector pixels and scatter positions. Image corrections of geometry, beam attenuation and scattering angle were performed to convert the raw image to the actual image of Compton attenuation coefficient. We set up a MC simulation system using an in-house developed GPU-based MC package modeling the image formation process. We also performed ray-tracing calculations to investigate the impacts of imaging system geometry on resulting image resolution. The experiment demonstrated feasibility of using a photon counting detector to measure scattered x-ray photons and generate the proposed scattered x-ray image. After correction, x-ray scattering image intensity and Compton scattering attenuation coefficient were linearly related, with R2=0.91. Contrast to Noise Ratios of different objects were improved and the values in experimental results and MC simulation results agreed with each other. Ray-tracing calculations revealed the dependence of image resolution on imaging geometry. The image resolution increases with reduced source to object distance and increased collimator height. The study demonstrated potential feasibility of using scattered x-ray imaging as a real-time image guidance method in radiation therapy.

preprint2016arXiv

Neutrino properties from ultra-high energy cosmic neutrinos

Neutrino properties can be constrained by the detection of ultra-high energy cosmic neutrinos (UHECNs). By using the updated global fitting results of neutrino mixing parameters, we present predictions on the neutrino flavor ratios at the Earth from three possibly astrophysical sources. Comparing with the latest IceCube data, we find that the normal hierarchy (NH) and inverted hierarchy (IH) cases from the initial ratios $ϕ_{ν_e}^0:ϕ_{ν_μ}^0:ϕ_{ν_τ}^0=$1:2:0 and 0:1:0 are compatible with the data in the standard neutrino oscillation scenario. We also examine the neutrino flavor ratios in a neutrino decay scenario beyond the standard model, and introduce the special case that two mass eigenstates of neutrinos, i.e., $ν_1$ and $ν_2$, are degenerated. We find that the IH case and the degenerate NH case from the 1:2:0 and 0:1:0 sources are still permissible with the IceCube data within the $3σ$ error range. The general constraints only rely on the neutrino mixing and oscillation framework are also discussed.

preprint2014arXiv

Constraints on absolute neutrino Majorana mass from current data

We present new constraints on the neutrino Majorana masses from the current data of neutrinoless double beta decay and neutrino flavour mixing. With the latest results of $0νββ$ progresses from various isotopes, including the recent calculations of the nuclear matrix elements, we find that the strongest constraint of the effective Majorana neutrino mass is from the $^{136}\rm{Xe}$ data of the EXO-200 and KamLAND-Zen collaborations. Further more, by combining the $0νββ$ experimental data with the neutrino mixing parameters from new analyses, we get the mass upper limits of neutrino mass eigenstates and flavour eigenstates and suggest several relations among these neutrino masses.