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Ulisse Ferrari

Ulisse Ferrari contributes to research discovery and scholarly infrastructure.

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Published work

3 published item(s)

preprint2026arXiv

A multi-scale information geometry reveals the structure of mutual information in neural populations

Understanding how neural population responses represent sensory information is a central problem in systems neuroscience. One approach is to define a representational geometry on stimulus space in which distances reflect how reliably stimuli can be distinguished from neural activity. However, different constructions of these distances can lead to qualitatively different conclusions about the neural code. Here, we show that a unique Riemannian representational geometry emerges from first principles governing how distances contract as stimulus resolution is lost through coarse-graining. This results in a multi-scale extension of the Fisher information metric, capturing encoding structure from fine stimulus details to coarse global distinctions. The resulting geometry is exactly related to the mutual information encoded by the population: well encoded stimulus directions - those contributing more to mutual information - are expanded, whereas poorly encoded directions are contracted. The metric tensor can be estimated using diffusion models, making the framework practical for large neural populations and high-dimensional stimuli. Applied to visual cortical responses to natural images, the eigenvectors of the metric tensor identify stimulus variations that contribute most to information transmission, yielding interpretable features that are robust to modelling choices. Together, these results provide a principled, information-theoretic framework for characterising neural population codes.

preprint2022arXiv

Time-dependent maximum entropy model for populations of retinal ganglion cells

The inverse Ising model is used in computational neuroscience to infer probability distributions of the synchronous activity of large neuronal populations. This method allows for finding the Boltzmann distribution with single neuron biases and pairwise interactions that maximizes the entropy and reproduces the empirical statistics of the recorded neuronal activity. Here we apply this strategy to large populations of retinal output neurons (ganglion cells) of different types, stimulated by multiple visual stimuli with their own statistics. The activity of retinal output neurons is driven by both the inputs from upstream neurons and the recurrent connections. We first apply the standard inverse Ising model approach, and show that it accounts well for the system's collective behavior when the input visual stimulus has short-ranged spatial correlations, but fails for long-ranged ones. This happens because stimuli with long-ranged spatial correlations synchronize the activity of neurons over long distances. This effect cannot be accounted for by pairwise interactions, and so by the pairwise Ising model. To solve this issue, we apply a previously proposed framework that includes a temporal dependence in the single neurons biases to model how neurons are driven in time by the stimulus. Thanks to this addition, the stimulus effects are taken into account by the biases, and the pairwise interactions allow for characterizing the network effect in the population activity and for reproducing the structure of the recurrent functional connections in the retinal architecture. We found that the retinal architecture splits into weakly interacting subpopulations composed of strongly interacting neurons. Overall, this temporal framework fixes the problems of the standard, static, inverse Ising model and accounts for the system's collective behavior, for stimuli with either short or long-range correlations.

preprint2019arXiv

Cholinergic switch between two types of slow waves in cerebral cortex

Sleep slow waves are known to participate in memory consolidation, yet slow waves occurring under anesthesia present no positive effects on memory. Here, we shed light onto this paradox, based on a combination of extracellular recordings in vivo, in vitro, and computational models. We find two types of slow waves, based on analyzing the temporal patterns of successive slow-wave events. The first type is consistently observed in natural slow-wave sleep, while the second is shown to be ubiquitous under anesthesia. Network models of spiking neurons predict that the two slow wave types emerge due to a different gain on inhibitory vs excitatory cells and that different levels of spike-frequency adaptation in excitatory cells can account for dynamical distinctions between the two types. This prediction was tested in vitro by varying adaptation strength using an agonist of acetylcholine receptors, which demonstrated a neuromodulatory switch between the two types of slow waves. Finally, we show that the first type of slow-wave dynamics is more sensitive to external stimuli, which can explain how slow waves in sleep and anesthesia differentially affect memory consolidation, as well as provide a link between slow-wave dynamics and memory diseases.