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Li Cui

Li Cui contributes to research discovery and scholarly infrastructure.

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Published work

4 published item(s)

preprint2026arXiv

Continuous-tone Simple Points: An $\ell_0$-Norm of Cyclic Gradient for Topology-Preserving Data-Driven Image Segmentation

Topological features play an essential role in ensuring geometric plausibility and structural consistency in image analysis tasks such as segmentation and skeletonization. However, integrating topology-preserving learning based on simple points into deep learning tasks remains challenging, as existing simple point detection methods are confined to binary images and are non-differentiable, rendering them incompatible with gradient-based optimization in modern deep learning. Moreover, morphological and purely data-driven approaches often fail to guaranty topological consistency. To address these limitations, we propose a novel method that directly computes simple points on continuous-valued images, enabling differentiable topological inference. Building on this theory, we develop an efficient skeleton extraction algorithm that preserves topological structures in binary and continuous-valued images. Furthermore, we design a variational model that enforces topological constraints by preserving topologically non-removable (i.e., non-simple) points, which can be seamlessly integrated into any deep neural network segmentation with softmax or sigmoid outputs. Experimental results demonstrate that the proposed approach effectively improves topological integrity and structural accuracy across multiple benchmarks. The codes are available in https://github.com/levnsio/CSP.

preprint2022arXiv

Image Segmentation with Adaptive Spatial Priors from Joint Registration

Image segmentation is a crucial but challenging task that has many applications. In medical imaging for instance, intensity inhomogeneity and noise are common. In thigh muscle images, different muscles are closed packed together and there are often no clear boundaries between them. Intensity based segmentation models cannot separate one muscle from another. To solve such problems, in this work we present a segmentation model with adaptive spatial priors from joint registration. This model combines segmentation and registration in a unified framework to leverage their positive mutual influence. The segmentation is based on a modified Gaussian mixture model (GMM), which integrates intensity inhomogeneity and spacial smoothness. The registration plays the role of providing a shape prior. We adopt a modified sum of squared difference (SSD) fidelity term and Tikhonov regularity term for registration, and also utilize Gaussian pyramid and parametric method for robustness. The connection between segmentation and registration is guaranteed by the cross entropy metric that aims to make the segmentation map (from segmentation) and deformed atlas (from registration) as similar as possible. This joint framework is implemented within a constraint optimization framework, which leads to an efficient algorithm. We evaluate our proposed model on synthetic and thigh muscle MR images. Numerical results show the improvement as compared to segmentation and registration performed separately and other joint models.

preprint2020arXiv

The Normal Map Based on Area-Preserving Parameterization

In this paper, we present an approach to enhance and improve the current normal map rendering technique. Our algorithm is based on semi-discrete Optimal Mass Transportation (OMT) theory and has a solid theoretical base. The key difference from previous normal map method is that we preserve the local area when we unwrap a disk-like 3D surface onto 2D plane. Compared to the currently used techniques which is based on conformal parameterization, our method does not need to cut a surface into many small pieces to avoid the large area distortion. The following charts packing step is also unnecessary in our framework. Our method is practical and makes the normal map technique more robust and efficient.

preprint2020arXiv

Volume Preserving Image Segmentation with Entropic Regularization Optimal Transport and Its Applications in Deep Learning

Image segmentation with a volume constraint is an important prior for many real applications. In this work, we present a novel volume preserving image segmentation algorithm, which is based on the framework of entropic regularized optimal transport theory. The classical Total Variation (TV) regularizer and volume preserving are integrated into a regularized optimal transport model, and the volume and classification constraints can be regarded as two measures preserving constraints in the optimal transport problem. By studying the dual problem, we develop a simple and efficient dual algorithm for our model. Moreover, to be different from many variational based image segmentation algorithms, the proposed algorithm can be directly unrolled to a new Volume Preserving and TV regularized softmax (VPTV-softmax) layer for semantic segmentation in the popular Deep Convolution Neural Network (DCNN). The experiment results show that our proposed model is very competitive and can improve the performance of many semantic segmentation nets such as the popular U-net.