Researcher profile

Juan Guan

Juan Guan contributes to research discovery and scholarly infrastructure.

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Published work

4 published item(s)

preprint2026arXiv

Discovering interpretable low-dimensional dynamics using maximum entropy

Models (i.e., governing equations) are fundamental to science and engineering. Advances in data acquisition now make it possible to extract interpretable, low dimensional descriptions from high dimensional observations. However, existing approaches sacrifice either interpretability for reconstruction accuracy or infer symbolic dynamics without relating latent coordinates to physically meaningful observables. Here we present Edwin (maximum entropy driven compression with interpretable nonlinear model discovery), a unified framework that simultaneously performs dimensionality reduction using the dynamic maximum entropy (DME) principle and discovers sparse symbolic models governing latent dynamics, as well as the coupling between learned features and external metadata. We validate Edwin on diverse simulated systems, including stochastic diffusion, the Ornstein-Uhlenbeck process, self assembling particles, spiking neural populations, and low rank recurrent neural networks, as well as on a noisy experimental time series of aggregating RNA-liposome complexes. Across all systems, Edwin recovers low dimensional symbolic models that are physically interpretable and generalize to unseen conditions. Together, these results establish Edwin as a powerful framework for inferring interpretable, low dimensional dynamics directly from high dimensional data.

preprint2013arXiv

Diagnosing Heterogeneous Dynamics in Single Molecule/Particle Trajectories with Multiscale Wavelets

We describe a simple automated method to extract and quantify transient heterogeneous dynamical changes from large datasets generated in single molecule/particle tracking experiments. Based on wavelet transform, the method transforms raw data to locally match dynamics of interest. This is accomplished using statistically adaptive universal thresholding, whose advantage is to avoid a single arbitrary threshold that might conceal individual variability across populations. How to implement this multiscale method is described, focusing on local confined diffusion separated by transient transport periods or hopping events, with 3 specific examples: in cell biology, biotechnology, and glassy colloid dynamics. This computationally-efficient method can run routinely on hundreds of millions of data points analyzed within an hour on a desktop personal computer.

preprint2013arXiv

Single-Molecule Observation of Long Jumps in Polymer Adsorption

Single-molecule fluorescence imaging of adsorption onto initially-bare surfaces shows that polymer chains need not localize immediately after arrival. In a system optimized to present limited adsorption sites (quartz surface to which polyethylene glycol (PEG) is exposed in aqueous solution at pH = 8.2) we find that some chains diffuse back into bulk solution and re-adsorb at some distance away, sometimes multiple times before either they localize at a stable position or else diffuse away into bulk solution. This mechanism of surface diffusion is considerably more rapid than the classical model in which adsorbed polymers crawl on surfaces while the entire molecule remains adsorbed. The trajectories with jumps follow a truncated Levy distribution of step size with limiting slope -2.5, consistent with a well-defined, rapid surface diffusion coefficient over the times we observe.

preprint2011arXiv

Automated Line Tracking of lambda-DNA for Single-Molecule Imaging

We describe a straightforward, automated line tracking method to visualize within optical resolution the contour of linear macromolecules as they rearrange shape as a function of time by Brownian diffusion and under external fields such as electrophoresis. Three sequential stages of analysis underpin this method: first, "feature finding" to discriminate signal from noise; second, "line tracking" to approximate those shapes as lines; third, "temporal consistency check" to discriminate reasonable from unreasonable fitted conformations in the time domain. The automated nature of this data analysis makes it straightforward to accumulate vast quantities of data while excluding the unreliable parts of it. We implement the analysis on fluorescence images of lambda-DNA molecules in agarose gel to demonstrate its capability to produce large datasets for subsequent statistical analysis.