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Benoit Favre

Benoit Favre contributes to research discovery and scholarly infrastructure.

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Published work

4 published item(s)

preprint2026arXiv

MedMeta: A Benchmark for LLMs in Synthesizing Meta-Analysis Conclusion from Medical Studies

Large language models (LLMs) have saturated standard medical benchmarks that test factual recall, yet their ability to perform higher-order reasoning, such as synthesizing evidence from multiple sources, remains critically under-explored. To address this gap, we introduce MedMeta, the first benchmark designed to evaluate an LLM's ability to generate conclusions from medical meta-analyses using only the abstracts of cited studies. MedMeta comprises 81 meta-analyses from PubMed (2018--2025) and evaluates models using two distinct workflows: a Retrieval-Augmented Generation (Golden-RAG) setting with ground-truth abstracts, and a Parametric-only approach relying on internal knowledge. Our evaluation framework is validated by a well-structured analysis showing our LLM-as-a-judge protocol strongly aligns with human expert ratings, as evidenced by high Pearson's r correlation (0.81) and Bland-Altman analysis revealing negligible systematic bias, establishing it as a reliable proxy for scalable evaluation. Our findings underscore the critical importance of information grounding: the Golden-RAG workflow consistently and significantly outperforms the Parametric-only approach across models. In contrast, the benefits of domain-specific fine-tuning are marginal and largely neutralized when external material is provided. Furthermore, stress tests show that all models, regardless of architecture, fail to identify and reject negated evidence, highlighting a critical vulnerability in current RAG systems. Notably, even under ideal RAG conditions, current LLMs achieve only slightly above-average performance (~2.7/5.0). MedMeta provides a challenging new benchmark for evidence synthesis and demonstrates that for clinical applications, developing robust RAG systems is a more promising direction than model specialization alone.

preprint2022arXiv

"Do you follow me?": A Survey of Recent Approaches in Dialogue State Tracking

While communicating with a user, a task-oriented dialogue system has to track the user's needs at each turn according to the conversation history. This process called dialogue state tracking (DST) is crucial because it directly informs the downstream dialogue policy. DST has received a lot of interest in recent years with the text-to-text paradigm emerging as the favored approach. In this review paper, we first present the task and its associated datasets. Then, considering a large number of recent publications, we identify highlights and advances of research in 2021-2022. Although neural approaches have enabled significant progress, we argue that some critical aspects of dialogue systems such as generalizability are still underexplored. To motivate future studies, we propose several research avenues.

preprint2022arXiv

ASR-Generated Text for Language Model Pre-training Applied to Speech Tasks

We aim at improving spoken language modeling (LM) using very large amount of automatically transcribed speech. We leverage the INA (French National Audiovisual Institute) collection and obtain 19GB of text after applying ASR on 350,000 hours of diverse TV shows. From this, spoken language models are trained either by fine-tuning an existing LM (FlauBERT) or through training a LM from scratch. New models (FlauBERT-Oral) are shared with the community and evaluated for 3 downstream tasks: spoken language understanding, classification of TV shows and speech syntactic parsing. Results show that FlauBERT-Oral can be beneficial compared to its initial FlauBERT version demonstrating that, despite its inherent noisy nature, ASR-generated text can be used to build spoken language models.

preprint2022arXiv

Zero-Shot and Few-Shot Classification of Biomedical Articles in Context of the COVID-19 Pandemic

MeSH (Medical Subject Headings) is a large thesaurus created by the National Library of Medicine and used for fine-grained indexing of publications in the biomedical domain. In the context of the COVID-19 pandemic, MeSH descriptors have emerged in relation to articles published on the corresponding topic. Zero-shot classification is an adequate response for timely labeling of the stream of papers with MeSH categories. In this work, we hypothesise that rich semantic information available in MeSH has potential to improve BioBERT representations and make them more suitable for zero-shot/few-shot tasks. We frame the problem as determining if MeSH term definitions, concatenated with paper abstracts are valid instances or not, and leverage multi-task learning to induce the MeSH hierarchy in the representations thanks to a seq2seq task. Results establish a baseline on the MedLine and LitCovid datasets, and probing shows that the resulting representations convey the hierarchical relations present in MeSH.